View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11342_high_5 (Length: 527)
Name: NF11342_high_5
Description: NF11342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11342_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 7 - 506
Target Start/End: Complemental strand, 1404900 - 1404404
Alignment:
| Q |
7 |
gcacgttggaagcctcttacccatcaccggttaaccttgacagtggaattttcatcaaagctcaaagctataatgtagcaccgacactttatattgacaa |
106 |
Q |
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| T |
1404900 |
gcacgttggaagcctcttacccatcaccggttaaccttgacagtggaattttcatcaaagctcaaagctataatgtagcaccgacactttatattgataa |
1404801 |
T |
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| Q |
107 |
tgatacatgcaattacatttaatcactttaattttttcaaattattttaacggtgtttgcgtctacggctcatgtcatgtccggtgtctgtgtttcatat |
206 |
Q |
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| T |
1404800 |
tgacacatgcaattacattcaatcattttaattttt-caaattattttaacgatgtttgcgtctacggctcatgtcatatctggtgtctgtgtttcatat |
1404702 |
T |
|
| Q |
207 |
cttgtagaaccttattgatccattgcttacataatagtactaaaataatcgaagaacaactaattaccaagacatggcttaatagttgataaatttagtt |
306 |
Q |
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| T |
1404701 |
cttgtagaaccttattgatccattgcttacataatagtactaaaataatcgaagaacaactaagtaccaagacatggcttaatagttgataaatttagtt |
1404602 |
T |
|
| Q |
307 |
ttcctaagagtaggtaaaagtatatttcttgcataatatgcgcataccatcatcacaaagacacaaaccatccaggaaagctacaataaaatttcaaagt |
406 |
Q |
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| T |
1404601 |
ttcccaagagtaggtaaaagtatatttcttggataatat--gcatgccatcatcacaaagacacaaaccatccaggaaagctacaataaaatttcaaagt |
1404504 |
T |
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| Q |
407 |
tggtatagccaagtattgaattcctctatacaaatcttaataacaaacaattctatgtgcattcaaatgcaatcccaaagcccatggttcacaaacatgt |
506 |
Q |
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| T |
1404503 |
tggaatagccaagtattgaattcctctatgcaaatcttaataacaaacaattctatgtgcattcaaatgcaatcccaaagcccatggttcacaaacatgt |
1404404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 282 - 353
Target Start/End: Original strand, 32094987 - 32095058
Alignment:
| Q |
282 |
ggcttaatagttgataaatttagttttcctaagagtaggtaaaagtatatttcttgcataatatgcgcatac |
353 |
Q |
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| T |
32094987 |
ggcttaatagttaataaattttgttttcctaagagtaggtaagaagatatttcttgcgtaatatgcacatac |
32095058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 437 - 476
Target Start/End: Original strand, 32095146 - 32095185
Alignment:
| Q |
437 |
caaatcttaataacaaacaattctatgtgcattcaaatgc |
476 |
Q |
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| T |
32095146 |
caaatcttaataacaaatgattctatgtgcattcaaatgc |
32095185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 229 - 267
Target Start/End: Original strand, 32094884 - 32094922
Alignment:
| Q |
229 |
ttgcttacataatagtactaaaataatcgaagaacaact |
267 |
Q |
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| T |
32094884 |
ttgcttacataatagtactaaaatgatccaagaacaact |
32094922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 118 - 152
Target Start/End: Original strand, 27531857 - 27531891
Alignment:
| Q |
118 |
attacatttaatcactttaattttttcaaattatt |
152 |
Q |
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| T |
27531857 |
attacatttaatcactttcattttttcaaattatt |
27531891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 152
Target Start/End: Original strand, 33331953 - 33331994
Alignment:
| Q |
111 |
acatgcaattacatttaatcactttaattttttcaaattatt |
152 |
Q |
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| T |
33331953 |
acatgtaattacatttaatcacttttattttctcaaattatt |
33331994 |
T |
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