View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11342_high_7 (Length: 483)
Name: NF11342_high_7
Description: NF11342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11342_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 53 - 464
Target Start/End: Original strand, 52719895 - 52720305
Alignment:
| Q |
53 |
gagaccaaaacatataacggagaaggacttaagagatctaaacgaattttttattacttgactaaagcgatactnnnnnnnnnnncgttaagggaccaaa |
152 |
Q |
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| T |
52719895 |
gagaccaaaacatataacggagaaggacttaagagatctaaacggactttttattacttgactaaagcaatactaaaaaaaaaag-gttaagggaccaaa |
52719993 |
T |
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| Q |
153 |
acaacattttagcctataattaatacccttaatgcttgtgaaacctccatttgttaaccaagtttgtgccagccagcctacattatttgttacagccata |
252 |
Q |
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| T |
52719994 |
acaacattttagcctataattaataccctaaatgcctgtgaagcctccatttgttaaccaagtttgtgccagccagcctacattatttgttacagccata |
52720093 |
T |
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| Q |
253 |
aatcaactgtaacccaaataaaaatgaccctgcctgattgagacgctttcttccactctgctaacatatataaaatgtaaaattagtgttacttttcatt |
352 |
Q |
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| T |
52720094 |
aatcaactgtaacccaaataaaaatgaccctgcctgatcgagacgctttcttccactctgctaacatatataaaatgtaaaattagtgttacttttcatt |
52720193 |
T |
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| Q |
353 |
tcatctcactaacaattacaccttcaattaaactttagcaattcaatccatggttactcctcatagcaaaatatattacaaggcaatatttctttacttt |
452 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||| |
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| T |
52720194 |
tcatctcactaacaattacaccttcaattaaactttagcaattcaatccatggttactcctcatagcaatatatattacaaggcaatatttgtatacttt |
52720293 |
T |
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| Q |
453 |
atttgaatgtat |
464 |
Q |
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|||||||||||| |
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| T |
52720294 |
atttgaatgtat |
52720305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 171 - 369
Target Start/End: Original strand, 52711144 - 52711349
Alignment:
| Q |
171 |
attaatacccttaatgcttgtgaaacctccatttgttaaccaagtttgtgccagccagcctacattatttgttacagccataaatcaactgtaacccaaa |
270 |
Q |
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||||||||||| |||||||||| | | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
52711144 |
attaataccctaaatgcttgtggagcttccatttgttaaccaagtttgtgccggccagcctacattatttgttacagccataaatcaattgtaacccaaa |
52711243 |
T |
|
| Q |
271 |
taaaa-------atgaccctgcctgattgagacgctttcttccactctgctaacatatataaaatgtaaaattagtgttacttttcatttcatctcacta |
363 |
Q |
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| T |
52711244 |
taaaaatgatggatgaccttgcctgattgagacgctttcttacactctgctaacctatataaaatgcaaaattagtgttacttttcatttcatctcacta |
52711343 |
T |
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| Q |
364 |
acaatt |
369 |
Q |
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||||| |
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| T |
52711344 |
gcaatt |
52711349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 388 - 464
Target Start/End: Original strand, 52711342 - 52711418
Alignment:
| Q |
388 |
tagcaattcaatccatggttactcctcatagcaaaatatattacaaggcaatatttctttactttatttgaatgtat |
464 |
Q |
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| T |
52711342 |
tagcaattcaatccatggatactcctcatagcaacatatatcacaaggcaatatttgtttactttatttgaatgtat |
52711418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 52719712 - 52719763
Alignment:
| Q |
1 |
aaagggaaaaacaatatgagatggtgatggtgtactattacttacaatagat |
52 |
Q |
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| T |
52719712 |
aaagggaaaaacaatatgagatggtgatggtgtactattacttacaatagat |
52719763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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