View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11342_high_8 (Length: 473)
Name: NF11342_high_8
Description: NF11342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11342_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 19 - 467
Target Start/End: Complemental strand, 48187023 - 48186572
Alignment:
| Q |
19 |
caatcattggtcctggtttgtgtttttgctttcataacttgaaaagaacataaacagtactgattgtcactttcctgtgttctttttatcttattcttct |
118 |
Q |
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| T |
48187023 |
caatcattggtcctgctttgt--ttttgctttcataacttgaaaagaacataaacaatactgattgtcactttcctgtgttctttttatcttattcttct |
48186926 |
T |
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| Q |
119 |
aaaaattaagagccaagccaagatattaagattaagcattaaaaagatatattcttaaaatagcttgtaatcaataaaagtgacagaacaacatatataa |
218 |
Q |
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| T |
48186925 |
aaaaattaagagccaagccaagatattaagattaagcattaaaaagatatattcttaaaatagcttgtaatcaataaaagtgacagaacaacatatataa |
48186826 |
T |
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| Q |
219 |
tgtacaaatcatccctaagccttaaaaaattgcagcatttctgcaatgctcgacttttctgtctataataatattatatttatccaaatataaggaactt |
318 |
Q |
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| T |
48186825 |
tgtacaaatcatccctaagccttaaaaaattgcagcatttctgcaatgctcgacttttctgtctataataatattatatttatccaaatataaggaactt |
48186726 |
T |
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| Q |
319 |
ttgtctg-----nnnnnnnnctacctagacccaattaattgtgtatgggagactttttcctagctggtgaataatccatctcagttatgtctacaaggtc |
413 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48186725 |
ttgtctgtttttttttccttctacctagacccaattaattgtgtatgggagactttttcctagctggtgaataatccatctcagttatgtctacaaggtc |
48186626 |
T |
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| Q |
414 |
ctcagggagataattagaagtactcaatgattttacttttatttcctttgcttc |
467 |
Q |
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| T |
48186625 |
ctcagggagataattagaagtactcaatgattttacttttatttcctttgcttc |
48186572 |
T |
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