View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11342_high_9 (Length: 459)

Name: NF11342_high_9
Description: NF11342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11342_high_9
NF11342_high_9
[»] chr7 (5 HSPs)
chr7 (19-188)||(7655224-7655393)
chr7 (413-447)||(7655167-7655201)
chr7 (395-439)||(30969776-30969820)
chr7 (395-432)||(7754218-7754255)
chr7 (395-439)||(19267367-19267411)
[»] chr3 (1 HSPs)
chr3 (395-433)||(41417170-41417208)
[»] chr5 (1 HSPs)
chr5 (395-440)||(18345722-18345767)
[»] chr6 (1 HSPs)
chr6 (395-439)||(14536142-14536186)
[»] chr4 (1 HSPs)
chr4 (395-439)||(23499436-23499480)


Alignment Details
Target: chr7 (Bit Score: 166; Significance: 1e-88; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 7655393 - 7655224
Alignment:
Q  19 acgttaggcgcgaactcaatggtaaaattttgaccttgtaaccttaaggaaaggagttcaaatatccttaaaggtgtttatataataatcatttagtgtc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  7655393 acgttaggcgcgaactcaatggtaaaattttgaccttgtaaccttaaggaaaggagttcaaatatccttaaaggtgtttttataataatcatttagtgtc 7655294  T
Q  119 attataattaataataaaatctccattctccaattttattttttacaaaaagaaaaacagaagacgcaaa 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7655293 attataattaataataaaatctccattctccaattttattttttacaaaaagaaaaacagaagacgcaaa 7655224  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 413 - 447
Target Start/End: Complemental strand, 7655201 - 7655167
Alignment:
Q  413 ttgtaacaaactcgtgatttgtcatgacttgccta 447  Q
    |||||||||||||||||||||||||||||||||||    
T  7655201 ttgtaacaaactcgtgatttgtcatgacttgccta 7655167  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 395 - 439
Target Start/End: Original strand, 30969776 - 30969820
Alignment:
Q  395 gaaaataaagggttgttattgtaacaaactcgtgatttgtcatga 439  Q
    |||||| |||||||||||||||||||||||| |||||||| ||||    
T  30969776 gaaaatcaagggttgttattgtaacaaactcatgatttgttatga 30969820  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 432
Target Start/End: Complemental strand, 7754255 - 7754218
Alignment:
Q  395 gaaaataaagggttgttattgtaacaaactcgtgattt 432  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  7754255 gaaaatcaagggttgttattgtaacacactcgtgattt 7754218  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 395 - 439
Target Start/End: Complemental strand, 19267411 - 19267367
Alignment:
Q  395 gaaaataaagggttgttattgtaacaaactcgtgatttgtcatga 439  Q
    |||||| ||||||||||||| |||||||||| |||||||| ||||    
T  19267411 gaaaatcaagggttgttattttaacaaactcatgatttgttatga 19267367  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 395 - 433
Target Start/End: Original strand, 41417170 - 41417208
Alignment:
Q  395 gaaaataaagggttgttattgtaacaaactcgtgatttg 433  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  41417170 gaaaatcaagggttgttattgtaacaaactcgtgatttg 41417208  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 440
Target Start/End: Original strand, 18345722 - 18345767
Alignment:
Q  395 gaaaataaagggttgttattgtaacaaactcgtgatttgtcatgac 440  Q
    |||||| |||||||||||||| ||||||||| |||||||| |||||    
T  18345722 gaaaatcaagggttgttattgcaacaaactcatgatttgttatgac 18345767  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 395 - 439
Target Start/End: Original strand, 14536142 - 14536186
Alignment:
Q  395 gaaaataaagggttgttattgtaacaaactcgtgatttgtcatga 439  Q
    |||||| || ||||||||||| |||||||||||||||||| ||||    
T  14536142 gaaaatcaaaggttgttattgcaacaaactcgtgatttgttatga 14536186  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 395 - 439
Target Start/End: Complemental strand, 23499480 - 23499436
Alignment:
Q  395 gaaaataaagggttgttattgtaacaaactcgtgatttgtcatga 439  Q
    |||||| ||||||||||||| |||||||||| |||||||| ||||    
T  23499480 gaaaattaagggttgttattttaacaaactcatgatttgttatga 23499436  T

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