View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11342_low_16 (Length: 406)

Name: NF11342_low_16
Description: NF11342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11342_low_16
NF11342_low_16
[»] chr1 (9 HSPs)
chr1 (18-406)||(34312401-34312804)
chr1 (140-236)||(8259457-8259553)
chr1 (245-322)||(48941460-48941537)
chr1 (288-334)||(5959262-5959308)
chr1 (266-324)||(9693942-9693999)
chr1 (288-334)||(32714165-32714211)
chr1 (287-323)||(4085663-4085699)
chr1 (288-324)||(20381137-20381173)
chr1 (50-89)||(34322498-34322538)
[»] chr4 (7 HSPs)
chr4 (152-324)||(44707619-44707793)
chr4 (125-312)||(15024592-15024783)
chr4 (140-236)||(36755126-36755222)
chr4 (288-334)||(36755277-36755323)
chr4 (140-236)||(16529844-16529940)
chr4 (288-324)||(16529995-16530031)
chr4 (260-312)||(25197337-25197389)
[»] chr7 (8 HSPs)
chr7 (140-236)||(35015878-35015974)
chr7 (147-235)||(2485370-2485458)
chr7 (140-198)||(35016074-35016132)
chr7 (288-325)||(1778795-1778832)
chr7 (288-324)||(965397-965433)
chr7 (288-324)||(1706458-1706494)
chr7 (143-235)||(4167299-4167391)
chr7 (288-324)||(12287243-12287279)
[»] chr6 (5 HSPs)
chr6 (143-306)||(15489393-15489555)
chr6 (140-334)||(32183789-32183986)
chr6 (125-207)||(18560941-18561023)
chr6 (259-324)||(15134932-15134996)
chr6 (135-175)||(6838019-6838059)
[»] scaffold0039 (1 HSPs)
scaffold0039 (288-334)||(94219-94265)
[»] chr3 (5 HSPs)
chr3 (140-324)||(26952437-26952623)
chr3 (192-323)||(51370371-51370504)
chr3 (260-334)||(27371814-27371888)
chr3 (259-313)||(47342453-47342507)
chr3 (288-328)||(47495564-47495604)
[»] chr5 (4 HSPs)
chr5 (288-327)||(35377841-35377880)
chr5 (287-325)||(23419017-23419055)
chr5 (288-328)||(6783512-6783552)
chr5 (140-236)||(23418875-23418971)
[»] scaffold0043 (1 HSPs)
scaffold0043 (260-334)||(71588-71662)
[»] chr8 (4 HSPs)
chr8 (140-238)||(34474410-34474507)
chr8 (140-236)||(7186200-7186296)
chr8 (288-324)||(20765764-20765800)
chr8 (288-324)||(37127559-37127595)
[»] chr2 (3 HSPs)
chr2 (288-334)||(25322973-25323019)
chr2 (260-322)||(43652617-43652679)
chr2 (147-235)||(19494753-19494841)
[»] scaffold0069 (1 HSPs)
scaffold0069 (288-324)||(60926-60962)
[»] scaffold0001 (1 HSPs)
scaffold0001 (140-236)||(428299-428394)


Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 406
Target Start/End: Original strand, 34312401 - 34312804
Alignment:
Q  18 ataatgagccacttccagtgttgttaaaggctttattatctctta-tgaatgaaactagttgacttgtgtgtcaataggcatcgaacatgaattagttta 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34312401 ataatgagccacttccagtgttgttaaaggctttattatctcttaatgaatgaaactagttgacttgtgtgtcaataggcatcgaacatgaattagttta 34312500  T
Q  117 ttt----------actgcgaccatcaataatcttgggtgtttcagctatttagcatcatatta----aataggtatcctcattgcagagtataatatttg 202  Q
    |||          |||| |||| ||||||||| ||| ||||||| | ||||| ||||||||||    |||||||||||||||||||||||||||||||||    
T  34312501 tttgtgtttatttactgtgaccgtcaataatcgtggatgtttcaaccatttaacatcatattaattaaataggtatcctcattgcagagtataatatttg 34312600  T
Q  203 gatgtcaatggagaagtatggctatggaagcaccttctatttactttttgtggacttcattgaataaatcataacgaaataaagaaaattttgttgaaat 302  Q
    ||||||||| |||||  ||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||    
T  34312601 gatgtcaatagagaatgatggctatggaagcaccttctctttactttttgtgaacttcattcaataaatcataatgaaataaagaaaattttgttgaaat 34312700  T
Q  303 gtaacgatataaaatgatttgtatgacatattgttagattggatgttcaaaacactggattcgataagaaatattgttttaagttggtatcgatatgtga 402  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  34312701 gtaacgatatagaatgatttgtatgacatattgttagattggatgttcaaaacactggattcgataagaaatattgttttaagttggtactgatatgtga 34312800  T
Q  403 ttac 406  Q
    ||||    
T  34312801 ttac 34312804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 140 - 236
Target Start/End: Complemental strand, 8259553 - 8259457
Alignment:
Q  140 tgggtgtttcagctatttagcatcatattaaataggtatcctcattgcagagtataatatttggatgtcaatggagaagtatggctatggaagcacc 236  Q
    |||||| |||| |||||||||||||||||||||||| | || |||||  | ||||||||| ||| || | |||||||||  ||| ||||||||||||    
T  8259553 tgggtgcttcatctatttagcatcatattaaataggcacccccattgtggggtataatatatgggtggctatggagaagggtggttatggaagcacc 8259457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 245 - 322
Target Start/End: Complemental strand, 48941537 - 48941460
Alignment:
Q  245 actttttgtggacttcattgaataaatcataacgaaataaagaaaattttgttgaaatgtaacgatataaaatgattt 322  Q
    |||||||||||||  |||| || ||||||||| |||||||| ||| |||| ||||||||||| ||||| |||| ||||    
T  48941537 actttttgtggaccccatttaaaaaatcataatgaaataaataaatttttattgaaatgtaatgatatgaaattattt 48941460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 334
Target Start/End: Complemental strand, 5959308 - 5959262
Alignment:
Q  288 aaattttgttgaaatgtaacgatataaaatgatttgtatgacatatt 334  Q
    |||||||||||||||||||| ||||||||| ||||||| ||| ||||    
T  5959308 aaattttgttgaaatgtaacaatataaaattatttgtaggacctatt 5959262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 324
Target Start/End: Complemental strand, 9693999 - 9693942
Alignment:
Q  266 ataaatcataacgaaataaagaaaattttgttgaaatgtaacgatataaaatgatttgt 324  Q
    ||||||||||| |||||||| ||| |||||||||||||||| |||||| ||| ||||||    
T  9693999 ataaatcataatgaaataaataaa-ttttgttgaaatgtaatgatatagaattatttgt 9693942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 334
Target Start/End: Complemental strand, 32714211 - 32714165
Alignment:
Q  288 aaattttgttgaaatgtaacgatataaaatgatttgtatgacatatt 334  Q
    ||||||||||||||||||| |||||||||| ||||||| ||| ||||    
T  32714211 aaattttgttgaaatgtaatgatataaaattatttgtaggacttatt 32714165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 323
Target Start/End: Original strand, 4085663 - 4085699
Alignment:
Q  287 aaaattttgttgaaatgtaacgatataaaatgatttg 323  Q
    |||||||||||||||||||| |||||||||| |||||    
T  4085663 aaaattttgttgaaatgtaatgatataaaattatttg 4085699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 324
Target Start/End: Complemental strand, 20381173 - 20381137
Alignment:
Q  288 aaattttgttgaaatgtaacgatataaaatgatttgt 324  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  20381173 aaattttgttgaaatgtaatgatataaaattatttgt 20381137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 89
Target Start/End: Complemental strand, 34322538 - 34322498
Alignment:
Q  50 ttattatctctta-tgaatgaaactagttgacttgtgtgtc 89  Q
    ||||||||||||| |||||||||||||||||||| ||||||    
T  34322538 ttattatctcttaatgaatgaaactagttgacttttgtgtc 34322498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 152 - 324
Target Start/End: Complemental strand, 44707793 - 44707619
Alignment:
Q  152 ctatttagcatcatattaaataggtatcctcattgcagagtataatatttggatgtcaatggagaagtatggctatggaagcacc--ttctatttacttt 249  Q
    ||||||||||  |||||||||||  ||| ||||||  |||||||||||||||||| | | | |||||  || |||| ||| ||||  |||| |  |||||    
T  44707793 ctatttagcactatattaaatagacatcatcattgtggagtataatatttggatgcctaagaagaagggtgactatagaaacaccctttctctccacttt 44707694  T
Q  250 ttgtggacttcattgaataaatcataacgaaataaagaaaattttgttgaaatgtaacgatataaaatgatttgt 324  Q
    |||| |||  |||| |||||||||||| |||||||| ||| |||||||||||||||| |||||| ||| ||||||    
T  44707693 ttgtagaccccatttaataaatcataatgaaataaataaatttttgttgaaatgtaatgatatataattatttgt 44707619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 125 - 312
Target Start/End: Complemental strand, 15024783 - 15024592
Alignment:
Q  125 gaccatcaataatcttgggtgtttcagctatttagcatcatattaaataggtatcctcattgcagagtataatatttggatgtcaatggagaagtatggc 224  Q
    ||||||| |||||  ||| || |||| |||||||||||||||||||||||| | |  ||||   ||||||||||||| ||||||  | ||||||  ||||    
T  15024783 gaccatccataatagtggatgcttcacctatttagcatcatattaaataggcacctccattatggagtataatattttgatgtctctagagaagggtggc 15024684  T
Q  225 tatggaagcaccttctattt----actttttgtggacttcattgaataaatcataacgaaataaagaaaattttgttgaaatgtaacgatat 312  Q
    |||||||||| | ||| | |    |||||||||| ||  |||| |||||||||||| |||||||| | | |||||||||||| ||| |||||    
T  15024683 tatggaagcatcctctctctctacactttttgtgaaccccatttaataaatcataatgaaataaatatatttttgttgaaatataatgatat 15024592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 236
Target Start/End: Original strand, 36755126 - 36755222
Alignment:
Q  140 tgggtgtttcagctatttagcatcatattaaataggtatcctcattgcagagtataatatttggatgtcaatggagaagtatggctatggaagcacc 236  Q
    |||||| |||| |||||||||| ||||||||||||  | |  |||||  ||||||||||| ||| || | |||||||||  ||||||||||||||||    
T  36755126 tgggtgcttcatctatttagcaccatattaaatagacacctccattgtggagtataatatatgggtggctatggagaagggtggctatggaagcacc 36755222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 334
Target Start/End: Original strand, 36755277 - 36755323
Alignment:
Q  288 aaattttgttgaaatgtaacgatataaaatgatttgtatgacatatt 334  Q
    ||||||||||||||||||| |||||||||| ||||||| ||| ||||    
T  36755277 aaattttgttgaaatgtaatgatataaaattatttgtaggacttatt 36755323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 236
Target Start/End: Original strand, 16529844 - 16529940
Alignment:
Q  140 tgggtgtttcagctatttagcatcatattaaataggtatcctcattgcagagtataatatttggatgtcaatggagaagtatggctatggaagcacc 236  Q
    |||||| |||| |||||||||| || |||||||||| | || |||||  ||||||||||  ||| || | ||||||||   ||||||||||||||||    
T  16529844 tgggtgcttcacctatttagcaccacattaaataggcacccccattgtggagtataatacatgggtggctatggagaatggtggctatggaagcacc 16529940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 324
Target Start/End: Original strand, 16529995 - 16530031
Alignment:
Q  288 aaattttgttgaaatgtaacgatataaaatgatttgt 324  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  16529995 aaattttgttgaaatgtaatgatataaaattatttgt 16530031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 312
Target Start/End: Complemental strand, 25197389 - 25197337
Alignment:
Q  260 cattgaataaatcataacgaaataaagaaaattttgttgaaatgtaacgatat 312  Q
    |||| |||||||||||| |||||||| ||| ||| |||||||||||| |||||    
T  25197389 catttaataaatcataatgaaataaataaattttagttgaaatgtaatgatat 25197337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 140 - 236
Target Start/End: Complemental strand, 35015974 - 35015878
Alignment:
Q  140 tgggtgtttcagctatttagcatcatattaaataggtatcctcattgcagagtataatatttggatgtcaatggagaagtatggctatggaagcacc 236  Q
    ||||||||||| |||||||||| ||||||||||||| | ||||||||  ||||||||||| |||||| | || |||||   ||||||||||||||||    
T  35015974 tgggtgtttcatctatttagcaccatattaaataggcaccctcattgtggagtataatatatggatggctatagagaatggtggctatggaagcacc 35015878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 235
Target Start/End: Complemental strand, 2485458 - 2485370
Alignment:
Q  147 ttcagctatttagcatcatattaaataggtatcctcattgcagagtataatatttggatgtcaatggagaagtatggctatggaagcac 235  Q
    |||| |||||||||| ||||||||||| | ||||  |||| |||||||||||||||||||   |||||||||  || ||||| ||||||    
T  2485458 ttcatctatttagcaccatattaaatatgcatccatattgtagagtataatatttggatgcttatggagaagcgtgactatgaaagcac 2485370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 35016132 - 35016074
Alignment:
Q  140 tgggtgtttcagctatttagcatcatattaaataggtatcctcattgcagagtataata 198  Q
    |||||| |||| |||||||||| ||||||||||||| | ||||||||  ||||||||||    
T  35016132 tgggtgcttcatctatttagcaccatattaaataggcaccctcattgtggagtataata 35016074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 325
Target Start/End: Original strand, 1778795 - 1778832
Alignment:
Q  288 aaattttgttgaaatgtaacgatataaaatgatttgta 325  Q
    ||||||||||||||||||| |||||||||| |||||||    
T  1778795 aaattttgttgaaatgtaatgatataaaattatttgta 1778832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 324
Target Start/End: Original strand, 965397 - 965433
Alignment:
Q  288 aaattttgttgaaatgtaacgatataaaatgatttgt 324  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  965397 aaattttgttgaaatgtaatgatataaaattatttgt 965433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 324
Target Start/End: Complemental strand, 1706494 - 1706458
Alignment:
Q  288 aaattttgttgaaatgtaacgatataaaatgatttgt 324  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  1706494 aaattttgttgaaatgtaatgatataaaattatttgt 1706458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 235
Target Start/End: Complemental strand, 4167391 - 4167299
Alignment:
Q  143 gtgtttcagctatttagcatcatattaaataggtatcctcattgcagagtataatatttggatgtcaatggagaagtatggctatggaagcac 235  Q
    |||||||| |||||||||| ||||||||||||  | |||||||   ||||||||||||||  ||   |||||||||  || ||||||||||||    
T  4167391 gtgtttcacctatttagcaccatattaaatagacaccctcattatggagtataatatttgagtgattatggagaagagtgactatggaagcac 4167299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 324
Target Start/End: Original strand, 12287243 - 12287279
Alignment:
Q  288 aaattttgttgaaatgtaacgatataaaatgatttgt 324  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  12287243 aaattttgttgaaatgtaatgatataaaattatttgt 12287279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 143 - 306
Target Start/End: Original strand, 15489393 - 15489555
Alignment:
Q  143 gtgtttcagctatttagcatcatattaaataggtatcctcattgcagagtataatatttggatgtcaatggagaagtatggctatggaagcaccttctat 242  Q
    |||||||| |||||||||| || |||||||||| | || |||||  ||||||||||||||| |||| ||||||||   |||||||||||||||| ||| |    
T  15489393 gtgtttcacctatttagcaccacattaaataggcacccccattgtggagtataatatttgggtgtctatggagaaaagtggctatggaagcaccctctct 15489492  T
Q  243 ttactttttgtggacttcattgaataaatcataacgaaataaagaaaattttgttgaaatgtaa 306  Q
      | |||||| ||   ||||| |||||||| |||   ||||||| |||||| ||||||||||||    
T  15489493 ccattttttgcgggtctcatttaataaatcttaatataataaag-aaatttcgttgaaatgtaa 15489555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 140 - 334
Target Start/End: Original strand, 32183789 - 32183986
Alignment:
Q  140 tgggtgtttcagctatttagcatcatattaaataggtatcctcattgcagagtataatatttggatgtcaatggagaagtatggctatggaagcaccttc 239  Q
    |||||| |||| |||||||||||||||||||||||| | || |||||  ||||||||||| ||| || | ||||||||   |||||||||||||||| ||    
T  32183789 tgggtgcttcatctatttagcatcatattaaataggcacccccattgtggagtataatatatgggtggctatggagaacggtggctatggaagcaccctc 32183888  T
Q  240 tattt----actttttgtggacttcattgaataaatcataacgaaataaagaaaattttgttgaaatgtaacgatataaaatgatttgtatgacatatt 334  Q
    | |||    | ||||  |||    |||| |||||||| |||  |||||||  || |||||||||||||||| |||||||||| ||||||| ||| ||||    
T  32183889 tctttcttcatttttcatgggtcacatttaataaatcttaataaaataaa-taatttttgttgaaatgtaatgatataaaattatttgtaggacttatt 32183986  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 207
Target Start/End: Original strand, 18560941 - 18561023
Alignment:
Q  125 gaccatcaataatcttgggtgtttcagctatttagcatcatattaaataggtatcctcattgcagagtataatatttggatgt 207  Q
    ||||||| |||||  ||||||||||| |||||   ||||||||||||||| || ||| ||||||||||| ||| ||| |||||    
T  18560941 gaccatctataatgatgggtgtttcaactattcgacatcatattaaatagatacccttattgcagagtagaatctttagatgt 18561023  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 324
Target Start/End: Complemental strand, 15134996 - 15134932
Alignment:
Q  259 tcattgaataaatcataacgaaataaagaaaattttgttgaaatgtaacgatataaaatgatttgt 324  Q
    ||||| |||||||| |||  ||||||| ||| |||||||||||||||| |||||||||| ||||||    
T  15134996 tcatttaataaatcttaataaaataaataaa-ttttgttgaaatgtaatgatataaaattatttgt 15134932  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 6838059 - 6838019
Alignment:
Q  135 aatcttgggtgtttcagctatttagcatcatattaaatagg 175  Q
    |||| |||||| |||| ||||||||||||||||||||||||    
T  6838059 aatcgtgggtgcttcacctatttagcatcatattaaatagg 6838019  T

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Target: scaffold0039 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 334
Target Start/End: Complemental strand, 94265 - 94219
Alignment:
Q  288 aaattttgttgaaatgtaacgatataaaatgatttgtatgacatatt 334  Q
    ||||||||||||||||||| |||||||||| |||||||||| |||||    
T  94265 aaattttgttgaaatgtaatgatataaaattatttgtatgatatatt 94219  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 140 - 324
Target Start/End: Complemental strand, 26952623 - 26952437
Alignment:
Q  140 tgggtgtttcagctatttagcatcatattaaataggtatcctcattgcagagtataatatttggatgtcaatggagaagtatggctatggaagcaccttc 239  Q
    |||||| |||| |||||||||| ||||||||||||  | |  |||||  ||||||||||||||| || | ||||| |||  || ||||||||||||| ||    
T  26952623 tgggtgcttcacctatttagcaccatattaaatagacacctccattgtggagtataatatttgggtgcctatggacaagagtgactatggaagcaccctc 26952524  T
Q  240 tatttact---ttttgtggacttcattgaataaatcataacgaaataaagaaaattttgttgaaatgtaacgatataaaatgatttgt 324  Q
    | | |  |   ||||  ||||   ||| |||||||||||| |||||||| ||  |||||||||||||||| |||||||||| ||||||    
T  26952523 tctctcttcgcttttacggaccctatttaataaatcataatgaaataaataat-ttttgttgaaatgtaatgatataaaattatttgt 26952437  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 192 - 323
Target Start/End: Original strand, 51370371 - 51370504
Alignment:
Q  192 tataatatttggatgtcaatggagaagtatggctatggaagcac-ct-tctatttactttttgtggacttcattgaataaatcataacgaaataaagaaa 289  Q
    |||||||||||  |||| || ||||||  ||||||||||| ||| || ||| || ||||||||||||    ||| |||||||||||| |||||||| |||    
T  51370371 tataatatttgagtgtctatagagaagagtggctatggaaacactctctctcttcactttttgtggatcctatttaataaatcataatgaaataaataaa 51370470  T
Q  290 attttgttgaaatgtaacgatataaaatgatttg 323  Q
     |||||||||||| ||| ||||| |||| |||||    
T  51370471 tttttgttgaaatataatgatatgaaattatttg 51370504  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 334
Target Start/End: Original strand, 27371814 - 27371888
Alignment:
Q  260 cattgaataaatcataacgaaataaagaaaattttgttgaaatgtaacgatataaaatgatttgtatgacatatt 334  Q
    |||| |||||||||||| |||||||| ||||||| |||||| |  || |||||||||| ||||||| ||| ||||    
T  27371814 catttaataaatcataatgaaataaataaaatttagttgaattaaaatgatataaaattatttgtacgacctatt 27371888  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 259 - 313
Target Start/End: Original strand, 47342453 - 47342507
Alignment:
Q  259 tcattgaataaatcataacgaaataaagaaaattttgttgaaatgtaacgatata 313  Q
    ||||| |||||||||||| |||||||| ||| ||| |||||||||||| ||||||    
T  47342453 tcatttaataaatcataatgaaataaataaattttggttgaaatgtaatgatata 47342507  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 328
Target Start/End: Original strand, 47495564 - 47495604
Alignment:
Q  288 aaattttgttgaaatgtaacgatataaaatgatttgtatga 328  Q
    ||||||||||||||||||| |||||||||| |||| |||||    
T  47495564 aaattttgttgaaatgtaatgatataaaattatttatatga 47495604  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 288 - 327
Target Start/End: Complemental strand, 35377880 - 35377841
Alignment:
Q  288 aaattttgttgaaatgtaacgatataaaatgatttgtatg 327  Q
    ||||||||||||||||||| |||||||||| |||||||||    
T  35377880 aaattttgttgaaatgtaatgatataaaattatttgtatg 35377841  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 325
Target Start/End: Original strand, 23419017 - 23419055
Alignment:
Q  287 aaaattttgttgaaatgtaacgatataaaatgatttgta 325  Q
    |||||||||||||||||||| |||||||||| |||||||    
T  23419017 aaaattttgttgaaatgtaatgatataaaattatttgta 23419055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 328
Target Start/End: Complemental strand, 6783552 - 6783512
Alignment:
Q  288 aaattttgttgaaatgtaacgatataaaatgatttgtatga 328  Q
    ||||||| ||||||||||| |||||||||| ||||||||||    
T  6783552 aaattttattgaaatgtaatgatataaaattatttgtatga 6783512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 236
Target Start/End: Original strand, 23418875 - 23418971
Alignment:
Q  140 tgggtgtttcagctatttagcatcatattaaataggtatcctcattgcagagtataatatttggatgtcaatggagaagtatggctatggaagcacc 236  Q
    |||||| |||| ||||||| || | ||||||||||| | || |||||  ||||||||||| ||| || | ||||||||   ||||||||||||||||    
T  23418875 tgggtgcttcatctatttaacaccgtattaaataggcacccccattgtggagtataatatatgggtggctatggagaatggtggctatggaagcacc 23418971  T

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Target: scaffold0043 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 334
Target Start/End: Complemental strand, 71662 - 71588
Alignment:
Q  260 cattgaataaatcataacgaaataaagaaaattttgttgaaatgtaacgatataaaatgatttgtatgacatatt 334  Q
    |||| |||||||||||| |||||||| ||||||| |||||| |  || |||||||||| ||||||| ||| ||||    
T  71662 catttaataaatcataatgaaataaataaaatttagttgaattaaaatgatataaaattatttgtacgacctatt 71588  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 140 - 238
Target Start/End: Complemental strand, 34474507 - 34474410
Alignment:
Q  140 tgggtgtttcagctatttagcatcatattaaataggtatcctcattgcagagtataatatttggatgtcaatggagaagtatggctatggaagcacctt 238  Q
    ||||||||||| ||||||| || ||  ||||||| | |||| |||||  ||||||||||| |||||||| ||| |||||| |||||||| || ||||||    
T  34474507 tgggtgtttcacctatttaacaccacgttaaatatgcatcc-cattgtggagtataatatatggatgtctatgaagaagtgtggctatgaaaacacctt 34474410  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 236
Target Start/End: Original strand, 7186200 - 7186296
Alignment:
Q  140 tgggtgtttcagctatttagcatcatattaaataggtatcctcattgcagagtataatatttggatgtcaatggagaagtatggctatggaagcacc 236  Q
    |||||| ||||  ||||||||| | ||||||||||| |  |||||||  ||| ||||||| ||| || | |||||||||  ||||||||||||||||    
T  7186200 tgggtgcttcacatatttagcaccgtattaaataggcactctcattgtggagaataatatatgggtggctatggagaagggtggctatggaagcacc 7186296  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 324
Target Start/End: Original strand, 20765764 - 20765800
Alignment:
Q  288 aaattttgttgaaatgtaacgatataaaatgatttgt 324  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  20765764 aaattttgttgaaatgtaatgatataaaattatttgt 20765800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 324
Target Start/End: Complemental strand, 37127595 - 37127559
Alignment:
Q  288 aaattttgttgaaatgtaacgatataaaatgatttgt 324  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  37127595 aaattttgttgaaatgtaatgatataaaattatttgt 37127559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 334
Target Start/End: Original strand, 25322973 - 25323019
Alignment:
Q  288 aaattttgttgaaatgtaacgatataaaatgatttgtatgacatatt 334  Q
    ||||||||||||||||||| |||||||||| ||||||  ||||||||    
T  25322973 aaattttgttgaaatgtaatgatataaaattatttgtgggacatatt 25323019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 322
Target Start/End: Original strand, 43652617 - 43652679
Alignment:
Q  260 cattgaataaatcataacgaaataaagaaaattttgttgaaatgtaacgatataaaatgattt 322  Q
    |||| ||||||| || | |||||||| ||||| |||||||||||||| |||||||||| ||||    
T  43652617 catttaataaattatgatgaaataaataaaatgttgttgaaatgtaatgatataaaattattt 43652679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 235
Target Start/End: Original strand, 19494753 - 19494841
Alignment:
Q  147 ttcagctatttagcatcatattaaataggtatcctcattgcagagtataatatttggatgtcaatggagaagtatggctatggaagcac 235  Q
    |||| |||||||| | ||||||||||||| | || |||||  ||||||||||| ||| || | ||||||||   |||||||||||||||    
T  19494753 ttcatctatttagtaccatattaaataggcacccccattgtggagtataatatatgggtgactatggagaatggtggctatggaagcac 19494841  T

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Target: scaffold0069 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 324
Target Start/End: Complemental strand, 60962 - 60926
Alignment:
Q  288 aaattttgttgaaatgtaacgatataaaatgatttgt 324  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  60962 aaattttgttgaaatgtaatgatataaaattatttgt 60926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 236
Target Start/End: Original strand, 428299 - 428394
Alignment:
Q  140 tgggtgtttcagctatttagcatcatattaaataggtatcctcattgcagagtataatatttggatgtcaatggagaagtatggctatggaagcacc 236  Q
    |||||| |||| |||||||||| || |||||||||| | || |||||  ||||||||||  ||| || | |||||||||  ||||||||||||||||    
T  428299 tgggtgcttcacctatttagcaccagattaaataggcaccc-cattgtggagtataatacatgggtggctatggagaagggtggctatggaagcacc 428394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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