View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11342_low_17 (Length: 390)
Name: NF11342_low_17
Description: NF11342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11342_low_17 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 18 - 390
Target Start/End: Original strand, 33537508 - 33537883
Alignment:
| Q |
18 |
atttgtctcttttataataccaatacaacatttattcatcctttataagatgatgctttgatgtggcttgcggacatgaatggagt---tactgttaggt |
114 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
33537508 |
atttgtctcttttataataccaatataacatttattcatcctttataagatgatgctttgatgtggcttgcggacatgagtggagtctatactgttaggt |
33537607 |
T |
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| Q |
115 |
cggggtgcaattttggtatgagattagcagtggagggtaagaatcatgtcaccggggactggagcagtctgtggcatactcgtgtaccaccaaaaaccag |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33537608 |
cggggtgcaattttggtatgagattagcagtggagggtaagaatcatgtcaccggggactggagcagtctgtggcatactcgtgtaccaccaaaaaccag |
33537707 |
T |
|
| Q |
215 |
gaaccttgcctggaggatttgcagacgatgccttccaactagacgtaggctgcatgagcgtcgagtacagggtccactaaactgtgcagtgtgtgaggat |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33537708 |
gaaccttgcctggaggatttgcagacgatgccttccaactagacgtaggctgcatgagcgtcgagtacagggtccactaaactgtgcagtgtgtgaggat |
33537807 |
T |
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| Q |
315 |
caagtagaggacgattgacacttattatttcactgcaaaactatggcagaatactgggatattgcaggattggcgc |
390 |
Q |
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|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
33537808 |
caagtagatgacgattggcacttattatttcactgcaaaactatggcagaatactgggatattgtaggattggcgc |
33537883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 31295503 - 31295538
Alignment:
| Q |
18 |
atttgtctcttttataataccaatacaacatttatt |
53 |
Q |
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|||||||| ||||||||||||||||||||||||||| |
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| T |
31295503 |
atttgtctattttataataccaatacaacatttatt |
31295538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 39213286 - 39213321
Alignment:
| Q |
18 |
atttgtctcttttataataccaatacaacatttatt |
53 |
Q |
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||||||| |||||||||||||||||||||||||||| |
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| T |
39213286 |
atttgtcccttttataataccaatacaacatttatt |
39213321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 27966182 - 27966214
Alignment:
| Q |
18 |
atttgtctcttttataataccaatacaacattt |
50 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
27966182 |
atttgtctcttttataataccaatacaacattt |
27966214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 27882971 - 27883003
Alignment:
| Q |
18 |
atttgtctcttttataataccaatacaacattt |
50 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |
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|
| T |
27882971 |
atttgtcacttttataataccaatacaacattt |
27883003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 28023151 - 28023183
Alignment:
| Q |
18 |
atttgtctcttttataataccaatacaacattt |
50 |
Q |
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||||||| ||||||||||||||||||||||||| |
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|
| T |
28023151 |
atttgtcacttttataataccaatacaacattt |
28023183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 38763503 - 38763538
Alignment:
| Q |
18 |
atttgtctcttttataataccaatacaacatttatt |
53 |
Q |
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||||||| |||||||||||||||||||||||||||| |
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| T |
38763503 |
atttgtcccttttataataccaatacaacatttatt |
38763538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 7415606 - 7415573
Alignment:
| Q |
20 |
ttgtctcttttataataccaatacaacatttatt |
53 |
Q |
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|||||||||||||||||||||| ||||||||||| |
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| T |
7415606 |
ttgtctcttttataataccaattcaacatttatt |
7415573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 7461689 - 7461656
Alignment:
| Q |
20 |
ttgtctcttttataataccaatacaacatttatt |
53 |
Q |
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|||||||||||||||||||||| ||||||||||| |
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| T |
7461689 |
ttgtctcttttataataccaattcaacatttatt |
7461656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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