View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11342_low_2 (Length: 681)
Name: NF11342_low_2
Description: NF11342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11342_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 608; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 608; E-Value: 0
Query Start/End: Original strand, 17 - 664
Target Start/End: Complemental strand, 14248347 - 14247700
Alignment:
| Q |
17 |
atcaacaaaagacattgagtaaattctactgaattgaatattattggctttgtgcactcatcgtcacaatcgaacaaaattttcctagctagctaattca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
14248347 |
atcaacaaaagacattgagtaaattctactgaattgaatattcttggctttgtgcactcatcgtcaccatcgaacaaaattttcctagctagctaattca |
14248248 |
T |
|
| Q |
117 |
aacaattggacgtcttagaaagtagtcttaataacatagaatttgggacgaagggttgaaagttactcaaccatttgctcatgactgctaagcatgttga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14248247 |
aacaattggacgtcttagaaagtagtcttaataacatagaatttgggacgaagggttgaaagttactcaaccatttgctcatgactgctaagcatgttga |
14248148 |
T |
|
| Q |
217 |
gttcctatcttagacttcatcttgctccatcccaataagggcgttgaccttggaaaggtcattttggagcctatcagagcaaatggggtgcaacacttag |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
14248147 |
gttcctatcttagacttcatcttgctccatcccaataagggcgttgaccttggaaaggtcattttggagcctatcagagcaaatggggcgcaacacttag |
14248048 |
T |
|
| Q |
317 |
tacaggacgtgaacccacctacccagccacaagactcatctcagcattgagcactaaaaatataacaatatcagtacacattgtcacactactactgttt |
416 |
Q |
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||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14248047 |
tacaggacgtgaacctacctccccagccacaagactcatctcagcattgagcactaaaaatataacaatatcagtacacattgtcacactactactgttt |
14247948 |
T |
|
| Q |
417 |
ggtgctttagaaaattcacgttgtgcaaacatgagacacaagacttactatcacacccataaacaaacatgacattagtgactcgaattgcaacaagaac |
516 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
14247947 |
ggtgctttagaaaattcatgttgtgcaaacatgagacacaagatttactatcaaacccataaacaaaaatgacattagtgactcgaattgcaacaagaac |
14247848 |
T |
|
| Q |
517 |
cacacaatttcacaaatttaaaaggaaggaaagatcataattgtcctattcaaggtggtaagtaaactcacccataaggtgttcatacctcccacaaaca |
616 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14247847 |
cacacagtttcacaaatttaaaaggaaggaaagatcataattgtcctattcaaggtggtaagtaaactcacccataaggtgttcatacctcccacaaaca |
14247748 |
T |
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| Q |
617 |
acattgatgatagaatcgccacactcacaattgaacaaggctgctatt |
664 |
Q |
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| T |
14247747 |
acattgatgatagaatcgccacactcacaattgaacaaggctgctatt |
14247700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 263
Target Start/End: Complemental strand, 14263398 - 14263349
Alignment:
| Q |
214 |
tgagttcctatcttagacttcatcttgctccatcccaataagggcgttga |
263 |
Q |
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|||||||||| ||||||||||| ||||||||||||||| ||| |||||| |
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| T |
14263398 |
tgagttcctagtttagacttcatgttgctccatcccaattaggtcgttga |
14263349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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