View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11342_low_21 (Length: 340)
Name: NF11342_low_21
Description: NF11342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11342_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 35165733 - 35165416
Alignment:
| Q |
1 |
gcatgaagataagtacatgtaaaatgaaaaggcgagaaattcattggtgtatgcataaaatatagttatatggtacaaatgatgaggagattattttgaa |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35165733 |
gcatgaagataagtacatgtaaaatgaaaaagcgagaaattcattggtgtatgcataaaatatagttatatggtacaaatgatgaggagattattttgaa |
35165634 |
T |
|
| Q |
101 |
gcttttgacaaaagacaaaagaaatatcaatgaagcaatttgcttggtcttacaatgaggtttcaaaacaagattttgagtactgtagggacattc-ttt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||| |
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| T |
35165633 |
gcttttgacaaaagacaaaagaaatatcaatgaagcaatttgcttggtcttacaatgaggtttcaaaacatgattttgagtactgtatggacattctttt |
35165534 |
T |
|
| Q |
200 |
tgagtgtgtttgatcaaattatatagaagatatgttaaaacacaagagtttaattgtaatggaaatcaaattcggtcttactatgggaaacaaccaaaac |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35165533 |
tgagtgtgtttgatcaaattatatagaagatatgttaaaacacaagagtttaattgtaatggaaatcaaattcggtcttactatgggaaacaaccaaaac |
35165434 |
T |
|
| Q |
300 |
gtaatggaaatgatatgt |
317 |
Q |
| |
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|||||||||||||||||| |
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| T |
35165433 |
gtaatggaaatgatatgt |
35165416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 44791884 - 44792215
Alignment:
| Q |
1 |
gcatgaagataagtacatgtaaaatgaaaaggcgagaaattcattggtgtatgcataaaatatagttatatggtacaaatgatgagga------------ |
88 |
Q |
| |
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|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
44791884 |
gcatgaagataagtacgtgtaaaatgaaaaagcgagaaattcattggtgtatgcataaaatatagttatatggtacaaatgatgcataaaatataaaata |
44791983 |
T |
|
| Q |
89 |
--gattattttgaagcttttgacaaaagacaaaagaaatatcaatgaagcaatttgcttggtcttacaatgaggtttcaaaacaagattttgagtactgt |
186 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
44791984 |
tagattattttgaagcttttgacaaaagacaaaagaaatatcaatgaagcaatttgcttggtcttacaatgaggtttcaaaacatgattttgagtactgt |
44792083 |
T |
|
| Q |
187 |
agggacattcttttgagtgtgtttgatcaaattatatagaagatatgttaaaacacaagagtttaattgtaatggaaatcaaattcggtcttactatggg |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44792084 |
agggacattcttttgagtgtgtttgatcaaattatatagaagatatgttaaaacacaagagtttaattgtaatggaaatcaaattcggtcttactatggg |
44792183 |
T |
|
| Q |
287 |
aaacaacc-aaaacgtaatggaaatgatatgt |
317 |
Q |
| |
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|||||||| ||||||||||||||||||||||| |
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| T |
44792184 |
aaacaaccaaaaacgtaatggaaatgatatgt |
44792215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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