View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11342_low_23 (Length: 323)
Name: NF11342_low_23
Description: NF11342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11342_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 19 - 312
Target Start/End: Original strand, 12504932 - 12505221
Alignment:
| Q |
19 |
aaaacagctatacccattagtcataaccaaaccatttaacctagctatcaaaatatcgagtttcatatctcacatggcagcatcttcaccacaatcttcc |
118 |
Q |
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| T |
12504932 |
aaaacagctatacccattagtcataaccaaaccatttaaccta----tcaaaatatcgagtttcatatctcccatggcagcatcttcaccacaatcttcc |
12505027 |
T |
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| Q |
119 |
accaccatcaacaatcaccagcaagagcttccactaaaagaaatcccaggaacctatggcctccctttcatcggaccgattttggaccgacatgactttt |
218 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12505028 |
accaccatcagcaatcaccagcaagagcttccactaaaagaaatcccaggaacctatggcctccctttcatcggaccgattttggaccgacatgactttt |
12505127 |
T |
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| Q |
219 |
tctacaacaaaggcagagacaaattcttctcaactagaattcaaaaatacaattcaacagtcttcaaaaccaacatgccaccaggtccattcat |
312 |
Q |
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|||| ||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12505128 |
tctataaccaaggcagagacaaattcttctcaacaagaatacaaaaatacaattcaacagtcttcaaaaccaacatgccaccaggtccattcat |
12505221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 141 - 312
Target Start/End: Original strand, 12490505 - 12490676
Alignment:
| Q |
141 |
aagagcttccactaaaagaaatcccaggaacctatggcctccctttcatcggaccgattttggaccgacatgactttttctacaacaaaggcagagacaa |
240 |
Q |
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||||||| ||||||||| |||||||||| | ||||||||||||||||||||||||||| || |||||||| |||| ||||||||| |||| |||||||| |
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| T |
12490505 |
aagagctcccactaaaacaaatcccaggcagctatggcctccctttcatcggaccgatcttcgaccgacacgactacttctacaaccaaggaagagacaa |
12490604 |
T |
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| Q |
241 |
attcttctcaactagaattcaaaaatacaattcaacagtcttcaaaaccaacatgccaccaggtccattcat |
312 |
Q |
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|||||||||||| ||||| ||||||||||| |||||| |||||| ||||||||||||||||||||| ||||| |
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| T |
12490605 |
attcttctcaacaagaatccaaaaatacaactcaacaatcttcagaaccaacatgccaccaggtcccttcat |
12490676 |
T |
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