View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11342_low_25 (Length: 276)
Name: NF11342_low_25
Description: NF11342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11342_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 18 - 262
Target Start/End: Complemental strand, 28995857 - 28995613
Alignment:
| Q |
18 |
gagtgaggtgttatttgtctatacgtaacgcggaattttccagtttggtatatacgcgtttaatttttcttcattttgatttttctagagctatttctag |
117 |
Q |
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| T |
28995857 |
gagtgaggtgttatttgtctatacgtaacgcggaattttccagtttggtatatacgcgtttaatttttcttcattttgatttttctagagctatttctag |
28995758 |
T |
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| Q |
118 |
attaccatatgtagcaatagcattaattcaaagattgatttagtgttcggtggataaggtcgatagacggttcttttataccatttcaaattgctgacaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28995757 |
attaccatatgtagcaatagcattaattcaaagattgatttagtgttcggtggataaggtcgatagacggttcttttataccatttcaaattgctgacaa |
28995658 |
T |
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| Q |
218 |
cttcattattgttttttccttcaaaaaacttcattattatttgta |
262 |
Q |
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| T |
28995657 |
cttcattattgttttttccttcaaaaaacttcattattatttgta |
28995613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 29007848 - 29007744
Alignment:
| Q |
18 |
gagtgaggtgttatttgtctatacgtaacgcggaattttccagtttggtatatacgcgtttaatttttcttcattttgatttttctagagctatttctag |
117 |
Q |
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| T |
29007848 |
gagtgaggtgttgtgtgtctgtacgtaatgaagaattttctcgtttggtataaccgcgtttaatttttctt-agtttgatttttctacggctgtttctag |
29007750 |
T |
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| Q |
118 |
attacc |
123 |
Q |
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|||||| |
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| T |
29007749 |
attacc |
29007744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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