View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11342_low_28 (Length: 251)
Name: NF11342_low_28
Description: NF11342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11342_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 52454528 - 52454766
Alignment:
| Q |
1 |
aacatccaattcatgaacattggaaatttgaggaccaaatcggaaggtttgtccactaataccagcattagagagagttccaccaaccgataaatacaaa |
100 |
Q |
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| T |
52454528 |
aacatccaattcatgaacattggaaatttgaggaccaaatcggaaggtttgtccactaataccagcattagagagagttccaccaaccgataaatacaaa |
52454627 |
T |
|
| Q |
101 |
taatcagtccaagaaagtggtgtaagtcctttttcaaggcttgcatgcaacacatcaatccaacgttgtccaccaccaacatctacatatttatcaaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52454628 |
taatcagtccaagaaagtggtgtaagtcctttttcaaggcttgcatgcaacacatcaatccaacgttgtccaccaccaacatctacatatttatcaaaca |
52454727 |
T |
|
| Q |
201 |
taacaattccattcccattatttctaagctcattattca |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
52454728 |
caacaattccattcccattatttctaagctcattattca |
52454766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 189
Target Start/End: Complemental strand, 52443540 - 52443404
Alignment:
| Q |
53 |
ccactaataccagcattagagagagttccaccaaccgataaatacaaataatcagtccaagaaagtggtgtaagtcctttttcaaggcttgcatgcaaca |
152 |
Q |
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| T |
52443540 |
ccactaattccagcattggaaagtgttcctccaaccgtgaggtaaagatagtcagtccaagaaacaggtgcaagtccatgttcaagtgttgcatacaaaa |
52443441 |
T |
|
| Q |
153 |
catcaatccaacgttgtccaccaccaacatctacata |
189 |
Q |
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| T |
52443440 |
catcaatccatagttgttctcctccaacatcaacata |
52443404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 17275753 - 17275565
Alignment:
| Q |
1 |
aacatccaattcatgaacattggaaatttgaggaccaaatcggaaggtttgtccactaataccagcattagagagagttccaccaaccgataaatacaaa |
100 |
Q |
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|
||||||||||| ||||||| | | ||||||||||||| | || |||||||||||||||||||||||||||||||| || || |||| | ||| || | | |
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| T |
17275753 |
aacatccaattgatgaacactagtaatttgaggaccataacgaaaggtttgtccactaataccagcattagagagtgtccctccaatagttaagtaaaga |
17275654 |
T |
|
| Q |
101 |
taatcagtccaagaaagtggtgtaagtcctttttcaaggcttgcatgcaacacatcaatccaacgttgtccaccaccaacatctacata |
189 |
Q |
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|||||||||||||||| |||| |||||| | ||||| || ||| ||||||||||||||| ||||| | || |||||||| ||||| |
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| T |
17275653 |
taatcagtccaagaaacaggtgcaagtccatactcaagtgtttcatacaacacatcaatccatagttgttcccctccaacatcaacata |
17275565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 17243550 - 17243422
Alignment:
| Q |
1 |
aacatccaattcatgaacattggaaatttgaggaccaaatcggaaggtttgtccactaataccagcattagagagagttccaccaaccgataaatacaaa |
100 |
Q |
| |
|
||||||||||||| |||||||||| ||||| || ||||||| || ||||| || | ||| ||||||||||||||||| |||||||| || |||||||| |
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| T |
17243550 |
aacatccaattcaagaacattggagatttgtggtccaaatctaaaagtttggcccccaattccagcattagagagagtgccaccaacagacaaatacaag |
17243451 |
T |
|
| Q |
101 |
taatcagtccaagaaagtggtgtaagtcc |
129 |
Q |
| |
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|||||||||||||| || ||||| ||||| |
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|
| T |
17243450 |
taatcagtccaagagagaggtgtgagtcc |
17243422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 43 - 114
Target Start/End: Original strand, 52630566 - 52630637
Alignment:
| Q |
43 |
gaaggtttgtccactaataccagcattagagagagttccaccaaccgataaatacaaataatcagtccaaga |
114 |
Q |
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||||||||| |||||||||||| ||||||| ||||| ||||| || || |||||||| |||||||||||||| |
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| T |
52630566 |
gaaggtttggccactaataccaccattagatagagtaccacccacagacaaatacaagtaatcagtccaaga |
52630637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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