View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11342_low_3 (Length: 599)
Name: NF11342_low_3
Description: NF11342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11342_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 489; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 19 - 543
Target Start/End: Complemental strand, 27144983 - 27144459
Alignment:
| Q |
19 |
gcttcaagtggaagttacctaatggaatgaaaccaagtgagcttgatatgaatgatgtgtttggtctcactgctcctagagctgttcagcttgttgctgt |
118 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27144983 |
gcttcaagtgggagttacctaatggaatgaaaccaagtgagcttgatatgaatgatgtgtttggtctcactgctcctagagctgttcagcttgttgctgt |
27144884 |
T |
|
| Q |
119 |
acctagttatcgactcaattgtcctctttgatttattttctagttggttttatagactgtttcatgatttttcagccaaaaataatgtaattggggtctc |
218 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
27144883 |
acctagttatcgactcaattgtcctctttgatttattttctagttggttttatagactgtttcatgatttttcagccaaaaataatgtaattgggctctc |
27144784 |
T |
|
| Q |
219 |
aaattttaataagttgtaacattttagactcttaataaatatcattatgttgtgaatcgtatttatcaaaatcactagcatcacacatttcaataggccg |
318 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27144783 |
caattttaataagttgtaacattttagactcttaataaatatcactatgttgtgaatcgtatttatcaaaatcactagcatcacacatttcaataggccg |
27144684 |
T |
|
| Q |
319 |
taaataggagctgagtgtctacgttggcaagcatatgagaacaacgatctgcctctctcgaagcataacaaattgaacatgtccggtctctactatgaag |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27144683 |
taaataggagctgagtgtctacgttggcaagcatatgagcacaacgatttgcctctctcgaagcataacaaattgaacatgtccggtctctactatgaaa |
27144584 |
T |
|
| Q |
419 |
tagagtatggatttcattgagcagaagaatcaaaggagtataaatggtatggcctttcatgaccatatgagaaagagcaagagaaaacttgactaaaata |
518 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27144583 |
tagagtatggatttcgttgagcagaagaatcaaaggagtataaatggtatggcctttcatgaccatatgagaaagagcaagagaaaacttgactaaaata |
27144484 |
T |
|
| Q |
519 |
tattatttcttttattatttaaatg |
543 |
Q |
| |
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||| ||||||||||||||||||||| |
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| T |
27144483 |
tatcatttcttttattatttaaatg |
27144459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 19 - 543
Target Start/End: Original strand, 21181877 - 21182401
Alignment:
| Q |
19 |
gcttcaagtggaagttacctaatggaatgaaaccaagtgagcttgatatgaatgatgtgtttggtctcactgctcctagagctgttcagcttgttgctgt |
118 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
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|
| T |
21181877 |
gcttcaagtgggagttacctaatggaatgaaaccaagtgagcttgatatgaatgatgtgttaggtctcactgatcctagagctgttcagcttgttgctgt |
21181976 |
T |
|
| Q |
119 |
acctagttatcgactcaattgtcctctttgatttattttctagttggttttatagactgtttcatgatttttcagccaaaaataatgtaattggggtctc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
21181977 |
acctagttatcgactcaattgtcctctttgatttattttctagttggttttatagactgtttcatgatttttcagccaaaaataatgtaattgggctctc |
21182076 |
T |
|
| Q |
219 |
aaattttaataagttgtaacattttagactcttaataaatatcattatgttgtgaatcgtatttatcaaaatcactagcatcacacatttcaataggccg |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21182077 |
caattttaataagttgtaacattttagactcttaataaatatcactatgttgtgaatcgtatttatcaaaatcactagcatcacacatttcaataggccg |
21182176 |
T |
|
| Q |
319 |
taaataggagctgagtgtctacgttggcaagcatatgagaacaacgatctgcctctctcgaagcataacaaattgaacatgtccggtctctactatgaag |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21182177 |
taaataggagctgagtgtctacgttggcaagcatatgagcacaacaatttgcctctctcgaagcataacaaattgaacatgtccggtctctactatgaaa |
21182276 |
T |
|
| Q |
419 |
tagagtatggatttcattgagcagaagaatcaaaggagtataaatggtatggcctttcatgaccatatgagaaagagcaagagaaaacttgactaaaata |
518 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21182277 |
tagagtatggatttcgttgagcagaagaatcaaaggagtataaatggtatggcctttcatgaccatatgagaaagagcaagagaaaacttgactaaaata |
21182376 |
T |
|
| Q |
519 |
tattatttcttttattatttaaatg |
543 |
Q |
| |
|
||| ||||||||||||||||||||| |
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| T |
21182377 |
tatcatttcttttattatttaaatg |
21182401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 370 - 499
Target Start/End: Original strand, 31644571 - 31644700
Alignment:
| Q |
370 |
cctctctcgaagcataacaaattgaacatgtccggtctctactatgaagtagagtatggatttcattgagcagaagaatcaaaggagtataaatggtatg |
469 |
Q |
| |
|
||||||||| |||| |||||||||||||||||| |||||||| ||||||||||||||||||||| | ||||| |||||||||||||||| || ||| ||| |
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|
| T |
31644571 |
cctctctcggagcaaaacaaattgaacatgtccagtctctacaatgaagtagagtatggatttcgtcgagcataagaatcaaaggagtacaagtggcatg |
31644670 |
T |
|
| Q |
470 |
gcctttcatgaccatatgagaaagagcaag |
499 |
Q |
| |
|
||||||||| |||||||| ||||| |||| |
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|
| T |
31644671 |
acctttcatggccatatgaaaaagaccaag |
31644700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 346 - 459
Target Start/End: Complemental strand, 356509 - 356401
Alignment:
| Q |
346 |
caagcatatgagaacaacgatctgcctctctcgaagcataacaaattgaacatgtccggtctctactatgaagtagagtatggatttcattgagcagaag |
445 |
Q |
| |
|
|||||||| ||| |||||||| ||||||| ||| |||| ||||||| ||||| ||| |||| |||||| |||||||| ||||| ||||||||||| |
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| T |
356509 |
caagcatacgagcacaacgatttgcctctttcggagcaaaacaaatagaacacctcctgtctttactat-----agagtatgaatttcgttgagcagaag |
356415 |
T |
|
| Q |
446 |
aatcaaaggagtat |
459 |
Q |
| |
|
|||||| ||||||| |
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|
| T |
356414 |
aatcaatggagtat |
356401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 428 - 503
Target Start/End: Original strand, 12824122 - 12824197
Alignment:
| Q |
428 |
gatttcattgagcagaagaatcaaaggagtataaatggtatggcctttcatgaccatatgagaaagagcaagagaa |
503 |
Q |
| |
|
|||||| | ||| ||||| |||||| |||||||| ||||||| |||||| || |||||||| |||||||||||||| |
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|
| T |
12824122 |
gatttcttggagaagaaggatcaaatgagtataagtggtatgacctttcttggccatatgaaaaagagcaagagaa |
12824197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 100
Target Start/End: Original strand, 8262148 - 8262208
Alignment:
| Q |
40 |
atggaatgaaaccaagtgagcttgatatgaatgatgtgtttggtctcactgctcctagagc |
100 |
Q |
| |
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|||||||||| ||||||||| | ||||||| |||||| ||||| ||||||||||| ||||| |
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|
| T |
8262148 |
atggaatgaagccaagtgagatggatatgagtgatgtatttggactcactgctccaagagc |
8262208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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