View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11342_low_30 (Length: 245)
Name: NF11342_low_30
Description: NF11342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11342_low_30 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 16 - 245
Target Start/End: Complemental strand, 12505428 - 12505199
Alignment:
| Q |
16 |
agaagaacgttaagaagtaaacctttgataagtgcatggtttggttcagttgtgtctaagaaaggacagacacggtagcctccggtgaagtctatcgatg |
115 |
Q |
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| T |
12505428 |
agaagaacgttaagaagtaaacctttgataagtgcatggtttggttcagttgtgtctaagaaaggacagacacggtagcctccagtgaagtctatcgatg |
12505329 |
T |
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| Q |
116 |
gcatgaaggtaccatcgaagacattgtatttctcgacttttttgttgtcgaagaggatcggaaacgatgaagcatctaagagtgctatgactcttgggtt |
215 |
Q |
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| T |
12505328 |
gcatgaaggtaccatcgaagacattgtatttctcgacttttttgttgtcgaagaggatcggaaacgatgaagcatctaagagtgctatgactcttgggtt |
12505229 |
T |
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| Q |
216 |
tgaggaaatgaatggacctggtggcatgtt |
245 |
Q |
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| T |
12505228 |
tgaggaaatgaatggacctggtggcatgtt |
12505199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 34 - 245
Target Start/End: Complemental strand, 12490865 - 12490654
Alignment:
| Q |
34 |
aaacctttgataagtgcatggtttggttcagttgtgtctaagaaaggacagacacggtagcctccggtgaagtctatcgatggcatgaaggtaccatcga |
133 |
Q |
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| T |
12490865 |
aaacctttgataagtgcatggtttggttcagttgtgtctaggtaagcacatacacggtaaccaccggtgaattttgtcgacggcatgaatgtgccgtcga |
12490766 |
T |
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| Q |
134 |
agacattgtatttctcgacttttttgttgtcgaagaggatcggaaacgatgaagcatctaagagtgctatgactcttgggtttgaggaaatgaatggacc |
233 |
Q |
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| T |
12490765 |
ggacgttgagtttttcgacttttttgttgtcgaagagtatcgggaaagatgcggcgtctaagagtgctatgactcttgggtttgaggaaatgaagggacc |
12490666 |
T |
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| Q |
234 |
tggtggcatgtt |
245 |
Q |
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| T |
12490665 |
tggtggcatgtt |
12490654 |
T |
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