View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11342_low_31 (Length: 244)
Name: NF11342_low_31
Description: NF11342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11342_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 9 - 226
Target Start/End: Original strand, 4583198 - 4583415
Alignment:
| Q |
9 |
aggaggagcacagaattgaatattaatgctgtaaacctttgagaattcaagaagaaagagaataatgcattgaaggctaattcagttgagcatattagag |
108 |
Q |
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| T |
4583198 |
aggaggaatacagaattgaatattaatgctgtaaacctttgagaattcaagaagaaagagaataatgcattgaaggctaattcagttgagcatattagag |
4583297 |
T |
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| Q |
109 |
aaaaagtggaaagaggaagatatacaagtccatatgaatacatcaagtaaaccccttctacaagtaaaccaaaacctaagtatagggcnnnnnnntttgg |
208 |
Q |
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| T |
4583298 |
aaaaagtggaaagaggaagatatacaagcccatatgaatacatcaagtaaaccccttctacaagtaaaccaaaacctaagtatagggcaaaaaaatttgg |
4583397 |
T |
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| Q |
209 |
tctgattatggaggaatt |
226 |
Q |
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| T |
4583398 |
tttgattatggaggaatt |
4583415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 154
Target Start/End: Complemental strand, 40838897 - 40838761
Alignment:
| Q |
18 |
acagaattgaatattaatgctgtaaacctttgagaattcaagaagaaagagaataatgcattgaaggctaattcagttgagcatattagagaaaaagtgg |
117 |
Q |
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|||||||||||||| |||||||| ||| |||| ||||| | ||| |||| |||| ||||||||||||||||| |||| |||| || |||| | |||| |
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| T |
40838897 |
acagaattgaatatgaatgctgtgaacttttgggaattaaggaaataagaaaatactgcattgaaggctaattgtgttgcacatagtaaagaataggtgg |
40838798 |
T |
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| Q |
118 |
aaagaggaagatatacaagtccatatgaatacatcaa |
154 |
Q |
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| T |
40838797 |
aaagtgaaagatatagaagtccattggaatacatcaa |
40838761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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