View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11342_low_32 (Length: 240)
Name: NF11342_low_32
Description: NF11342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11342_low_32 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 52454343 - 52454121
Alignment:
| Q |
1 |
tcgaattaacccaatagttagtttgagtcgggtcataaactcatgtcatcannnnnnnnnnnaaattcctaaaaaatatatactattgaatgacatttta |
100 |
Q |
| |
|
|||||| |||| |||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||| || |
|
|
| T |
52454343 |
tcgaatcaacctaatagttagtttgagtcgggccataaactcatgtcatcatttttttga--aaattcctaaaatatatatactattgaatgacattcta |
52454246 |
T |
|
| Q |
101 |
tttcgtgaaaatttagaaattaggcttaactctacaaatcaaaattctaacatctgaattttactcccacaaatnnnnnnntaatttgaatctaactaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
52454245 |
tttcgtgaaaatttagaaattaggcttaactctacaaatcaaaattctaacatctgaattttactcccacaaataaaaaaataatttgaatctaactaaa |
52454146 |
T |
|
| Q |
201 |
taaatcaacacataaaagtcataaa |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
52454145 |
taaatcaacacataaaagtcataaa |
52454121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University