View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11342_low_4 (Length: 594)

Name: NF11342_low_4
Description: NF11342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11342_low_4
NF11342_low_4
[»] scaffold0256 (2 HSPs)
scaffold0256 (261-577)||(10800-11114)
scaffold0256 (1-262)||(11197-11496)
[»] chr2 (8 HSPs)
chr2 (264-539)||(233311-233586)
chr2 (271-536)||(21629371-21629635)
chr2 (158-262)||(21629176-21629281)
chr2 (16-91)||(21628996-21629071)
chr2 (41-91)||(233882-233932)
chr2 (101-155)||(21629099-21629153)
chr2 (158-262)||(233672-233777)
chr2 (116-161)||(233794-233839)
[»] chr1 (4 HSPs)
chr1 (264-539)||(7391909-7392184)
chr1 (41-91)||(7391563-7391613)
chr1 (116-161)||(7391656-7391701)
chr1 (158-262)||(7391718-7391823)
[»] chr7 (4 HSPs)
chr7 (264-539)||(48298427-48298702)
chr7 (158-262)||(48298788-48298893)
chr7 (116-161)||(48298910-48298955)
chr7 (47-91)||(48298998-48299042)
[»] chr6 (19 HSPs)
chr6 (2-91)||(16874085-16874174)
chr6 (2-91)||(16580225-16580314)
chr6 (158-262)||(16580419-16580523)
chr6 (158-262)||(16614857-16614961)
chr6 (2-91)||(16615066-16615155)
chr6 (395-535)||(16572727-16572867)
chr6 (395-535)||(16580748-16580888)
chr6 (395-535)||(16614492-16614632)
chr6 (395-535)||(16874609-16874749)
chr6 (158-262)||(16874279-16874383)
chr6 (37-90)||(16572274-16572327)
chr6 (267-355)||(16977314-16977403)
chr6 (101-159)||(16874202-16874260)
chr6 (101-161)||(16572356-16572416)
chr6 (101-161)||(16580342-16580402)
chr6 (101-161)||(16614978-16615038)
chr6 (158-221)||(16572433-16572495)
chr6 (224-262)||(16977492-16977530)
chr6 (16-77)||(16977698-16977759)


Alignment Details
Target: scaffold0256 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 261 - 577
Target Start/End: Complemental strand, 11114 - 10800
Alignment:
Q  261 ctcgaaatgctgaaggacaaaatcaaagaggtggcacttaggacatacttatttacgtcctcttcatcatatgattctttgagcgtggatcagctcgaaa 360  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||  ||||||||||||||| ||||    
T  11114 ctcgaaatgctgaaggacaaaatcaaagaggtggcacttaggacatacttatttacctcctcttcatcatacgattct--gagcgtggatcagctagaaa 11017  T
Q  361 attatttcgacatctctcctctttgtgttcatgttattgtcagtaagagtttaaagaatgacgagcttcatgtcagctgggaccaaccatctgtgtgcat 460  Q
    ||||||||||| ||||||||||| ||||||||| |||||| | ||||||||||| |||||| |||||||||||||||||||||||||||||||  |||||    
T  11016 attatttcgacctctctcctcttcgtgttcatgctattgtaattaagagtttaatgaatgatgagcttcatgtcagctgggaccaaccatctggatgcat 10917  T
Q  461 tgtgttccaaaatgttgaacactcaagggtgcaggctttggcgttcaagttgacttagaaattatctatccttgcagagtcggttggatctcaccgccgc 560  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  10916 tgtgttccaaaatgttgaacactcaagggtgcaggctttgtcgttcaagttgactgagaaattatctatccttgcagagtcggttggatcttaccgccgc 10817  T
Q  561 tccttcaggtggcagag 577  Q
    |||||||||||||||||    
T  10816 tccttcaggtggcagag 10800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 11496 - 11197
Alignment:
Q  1 cctaagcatgcgtttatttaacataacaattaactctttatttacttatctttcaggaaaggttggaaagaagcatgcagatgccatatcaaaga---at 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     ||    
T  11496 cctaagcatgcgtttatttaacataacaattaactctttatttacttatctttcaggaaaggttggaaagaagcatgcagatgccatatcatatgcatat 11397  T
Q  98 aa---------------gatcagtgtatctagtatctgctatgctactggaagttcccaatattgcagccaatgttcat--------------------c 162  Q
    ||               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                    |    
T  11396 aaatctcgatctcctaggatcagtgtatctagtatctgctatgctactggaagttcccaatattgcagccaatgttcatgatgcgaagcataagatcatc 11297  T
Q  163 agtaacaatttccttcgcttgctcaagatcagtgacaaaataacattcaacggtcctcctgaaatgttaaggatcatgtcatggttgtcacaaggcttct 262  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11296 agtaacaatttccttcgcttgctcgagatcagtgacaaaaaaacattcaacggtcctcctgaaatgttaaggatcatgtcatggttgtcacaaggcttct 11197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 124; Significance: 2e-63; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 264 - 539
Target Start/End: Complemental strand, 233586 - 233311
Alignment:
Q  264 gaaatgctgaaggacaaaatcaaagaggtggcacttaggacatacttatttacgtcctcttcatcatatgattctttgagcgtggatcagctcgaaaatt 363  Q
    ||||||||||||||||||||||| |||| ||| |||||||||||| ||||||| | |||||||||||||||||||||||| ||||||||||||  |||||    
T  233586 gaaatgctgaaggacaaaatcaaggaggaggcgcttaggacatacctatttactttctcttcatcatatgattctttgagtgtggatcagctcacaaatt 233487  T
Q  364 atttcgacatctctcctctttgtgttcatgttattgtcagtaagagtttaaagaatgacgagcttcatgtcagctgggaccaaccatctgtgtgcattgt 463  Q
     ||||||  |||||| || | ||||||||  ||||||||||| ||   | |  ||||| ||||||||||  |||||||| || ||| ||| ||||||| |    
T  233486 ttttcgatctctctcttcctcgtgttcatagtattgtcagtaggatgatgatcaatgaggagcttcatgcaagctgggatcagccaactgggtgcattat 233387  T
Q  464 gttccaaaatgttgaacactcaagggtgcaggctttggcgttcaagttgacttagaaattatctatccttgcagag 539  Q
     |||  ||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||    
T  233386 tttcagaaatgttgaacactcaagggtgcaggctttggcattccagttgactgagaaattatctatccttgcagag 233311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 271 - 536
Target Start/End: Original strand, 21629371 - 21629635
Alignment:
Q  271 tgaaggacaaaatcaaagaggtggcacttaggacatacttatttacgtcctcttcatcatatgattctttgagcgtggatcagctcgaaaattatttcga 370  Q
    |||||||||||||||| |||| |||||||||||||||| || |||| | ||||||||||||||| ||||||||| |||||||||||| |||  |||||||    
T  21629371 tgaaggacaaaatcaaggaggaggcacttaggacatacctaattaccttctcttcatcatatgaatctttgagcatggatcagctcgcaaaaaatttcga 21629470  T
Q  371 catctctcctctttgtgttcatgttattgtcagtaagagtttaaagaatgacgagcttcatgtcagctgggaccaaccatctgtgtgcattgtgttccaa 470  Q
    | |||||| ||   |  |||||   ||||||| ||||||| | | ||||| |||||||||||   ||||||| |||||||||| ||||||||| |||| |    
T  21629471 cctctctcttccccgcattcatagaattgtcactaagagtgtgatgaatggcgagcttcatgctggctgggatcaaccatctgggtgcattgtattccga 21629570  T
Q  471 aatgttgaacactcaagggtgcaggctttggcgttcaagttgacttagaaattatctatccttgca 536  Q
    |||||||||||||||||||||||||| ||||||||| |||||||| | ||| ||||||||||||||    
T  21629571 aatgttgaacactcaagggtgcaggccttggcgttcgagttgactaataaa-tatctatccttgca 21629635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 158 - 262
Target Start/End: Original strand, 21629176 - 21629281
Alignment:
Q  158 tcatcagtaacaatttccttcgcttgctcaagatcagtgacaaaataacattcaacggtcctcctg-aaatgttaaggatcatgtcatggttgtcacaag 256  Q
    |||||||||| ||||||| |||||||||| |||| |||||||||| |||||||||||||||||||| |||||||| ||||||||| |||| |||||||||    
T  21629176 tcatcagtaagaatttccatcgcttgctcgagataagtgacaaaagaacattcaacggtcctcctgaaaatgttagggatcatgttatggctgtcacaag 21629275  T
Q  257 gcttct 262  Q
     |||||    
T  21629276 acttct 21629281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 21628996 - 21629071
Alignment:
Q  16 atttaacataacaattaactctttatttacttatctttcaggaaaggttggaaagaagcatgcagatgccatatca 91  Q
    ||||||||| |||||||||||||| ||| ||||| |||||||||  |||||||||||||  || ||||||||||||    
T  21628996 atttaacatcacaattaactctttttttccttatatttcaggaattgttggaaagaagccggctgatgccatatca 21629071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 91
Target Start/End: Complemental strand, 233932 - 233882
Alignment:
Q  41 tttacttatctttcaggaaaggttggaaagaagcatgcagatgccatatca 91  Q
    |||| ||||||||||||||||||||||||||||   |||||||||||||||    
T  233932 tttaattatctttcaggaaaggttggaaagaagacggcagatgccatatca 233882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 155
Target Start/End: Original strand, 21629099 - 21629153
Alignment:
Q  101 atcagtgtatctagtatctgctatgctactggaagttcccaatattgcagccaat 155  Q
    ||||||||||||  ||||||||||| || |||||||||||||||| |||||||||    
T  21629099 atcagtgtatctcatatctgctatggtattggaagttcccaatatggcagccaat 21629153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 158 - 262
Target Start/End: Complemental strand, 233777 - 233672
Alignment:
Q  158 tcatcagtaacaatttccttcgcttgctcaagatcagtgacaaaataacattcaacggtcctcctgaaa-tgttaaggatcatgtcatggttgtcacaag 256  Q
    |||||||||| |||||||  ||||||||  || ||||||| |||  |||||||| |||||||||||||| ||| | ||||||||| |||| || ||||||    
T  233777 tcatcagtaagaatttccgccgcttgcttgaggtcagtgagaaacaaacattcaccggtcctcctgaaactgtcagggatcatgttatggctgccacaag 233678  T
Q  257 gcttct 262  Q
    | ||||    
T  233677 ggttct 233672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 161
Target Start/End: Complemental strand, 233839 - 233794
Alignment:
Q  116 atctgctatgctactggaagttcccaatattgcagccaatgttcat 161  Q
    |||||||||||| ||||||||||| || || |||||||||||||||    
T  233839 atctgctatgctgctggaagttccaaacatggcagccaatgttcat 233794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 124; Significance: 2e-63; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 264 - 539
Target Start/End: Original strand, 7391909 - 7392184
Alignment:
Q  264 gaaatgctgaaggacaaaatcaaagaggtggcacttaggacatacttatttacgtcctcttcatcatatgattctttgagcgtggatcagctcgaaaatt 363  Q
    |||||||| |||||||||||||| || | |||||||||||||||| ||||||| | ||||||||||||||||||||||||||||| |||||||  |||||    
T  7391909 gaaatgcttaaggacaaaatcaaggaagaggcacttaggacatacctatttaccttctcttcatcatatgattctttgagcgtggttcagctcacaaatt 7392008  T
Q  364 atttcgacatctctcctctttgtgttcatgttattgtcagtaagagtttaaagaatgacgagcttcatgtcagctgggaccaaccatctgtgtgcattgt 463  Q
     ||||||  |||||| || | ||||||||  ||||||||||| ||   |    ||||| ||||||||||  |||||||| |||||| ||| ||||||| |    
T  7392009 ttttcgatctctctcttcctcgtgttcatagtattgtcagtaggatgatggtcaatgaggagcttcatgcaagctgggatcaaccaactgggtgcattat 7392108  T
Q  464 gttccaaaatgttgaacactcaagggtgcaggctttggcgttcaagttgacttagaaattatctatccttgcagag 539  Q
     |||| ||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||    
T  7392109 tttccgaaatgttgaacactcaagggtgcaggctttggcattccagttgactgagaaattatctatccttgcagag 7392184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 91
Target Start/End: Original strand, 7391563 - 7391613
Alignment:
Q  41 tttacttatctttcaggaaaggttggaaagaagcatgcagatgccatatca 91  Q
    |||| ||||||||||||||||||||||||||||   |||||||||||||||    
T  7391563 tttaattatctttcaggaaaggttggaaagaagacggcagatgccatatca 7391613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 116 - 161
Target Start/End: Original strand, 7391656 - 7391701
Alignment:
Q  116 atctgctatgctactggaagttcccaatattgcagccaatgttcat 161  Q
    |||||||||||| |||||||||||||| || |||||||||||||||    
T  7391656 atctgctatgctgctggaagttcccaacatggcagccaatgttcat 7391701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 262
Target Start/End: Original strand, 7391718 - 7391823
Alignment:
Q  158 tcatcagtaacaatttccttcgcttgctcaagatcagtgacaaaataacattcaacggtcctcctgaaa-tgttaaggatcatgtcatggttgtcacaag 256  Q
    |||||||||| |||||||  ||||||||  || |||| || |||  |||||||| |||||||||||||| ||| | ||||||||| |||| || ||||||    
T  7391718 tcatcagtaagaatttccgacgcttgcttgaggtcagcgagaaacaaacattcaccggtcctcctgaaactgtcagggatcatgttatggctgccacaag 7391817  T
Q  257 gcttct 262  Q
    | ||||    
T  7391818 ggttct 7391823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 120; Significance: 4e-61; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 264 - 539
Target Start/End: Complemental strand, 48298702 - 48298427
Alignment:
Q  264 gaaatgctgaaggacaaaatcaaagaggtggcacttaggacatacttatttacgtcctcttcatcatatgattctttgagcgtggatcagctcgaaaatt 363  Q
    ||||||||||||||||||||||| |||| ||| |||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||  |||||    
T  48298702 gaaatgctgaaggacaaaatcaaggaggaggcgcttaggacatacctatttaccttctcttcatcatatgattctttgagcgtggatcagctcacaaatt 48298603  T
Q  364 atttcgacatctctcctctttgtgttcatgttattgtcagtaagagtttaaagaatgacgagcttcatgtcagctgggaccaaccatctgtgtgcattgt 463  Q
     ||||||  |||||| || | ||| ||||  ||||||||||| ||   | |  ||||| ||||||||||  |||||||| || ||| ||| ||||||| |    
T  48298602 ttttcgatctctctcttcctcgtgctcatagtattgtcagtaggatgatgatcaatgaggagcttcatgcaagctgggatcagccaactgggtgcattat 48298503  T
Q  464 gttccaaaatgttgaacactcaagggtgcaggctttggcgttcaagttgacttagaaattatctatccttgcagag 539  Q
     |||  ||||||||||| ||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||    
T  48298502 tttcagaaatgttgaactctcaagggtgcaggctttggcattccagttgactgagaaattatctatccttgcagag 48298427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 158 - 262
Target Start/End: Complemental strand, 48298893 - 48298788
Alignment:
Q  158 tcatcagtaacaatttccttcgcttgctcaagatcagtgacaaaataacattcaacggtcctcctgaaa-tgttaaggatcatgtcatggttgtcacaag 256  Q
    |||||||||| |||||||  ||||||||  || ||||||| |||  |||||||| |||||||||||||| ||| | ||||||||| |||| || ||||||    
T  48298893 tcatcagtaagaatttccgccgcttgcttgaggtcagtgagaaacaaacattcaccggtcctcctgaaactgtcagggatcatgttatggctgccacaag 48298794  T
Q  257 gcttct 262  Q
    | ||||    
T  48298793 ggttct 48298788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 116 - 161
Target Start/End: Complemental strand, 48298955 - 48298910
Alignment:
Q  116 atctgctatgctactggaagttcccaatattgcagccaatgttcat 161  Q
    |||||||||||| |||||||||||||| || |||||||||||||||    
T  48298955 atctgctatgctgctggaagttcccaacatggcagccaatgttcat 48298910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 91
Target Start/End: Complemental strand, 48299042 - 48298998
Alignment:
Q  47 tatctttcaggaaaggttggaaagaagcatgcagatgccatatca 91  Q
    |||||||||||||||||||||||||||   |||||||||||||||    
T  48299042 tatctttcaggaaaggttggaaagaagacggcagatgccatatca 48298998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 7e-29; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 16874085 - 16874174
Alignment:
Q  2 ctaagcatgcgtttatttaacataacaattaactctttatttacttatctttcaggaaaggttggaaagaagcatgcagatgccatatca 91  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||   ||||||||||||||    
T  16874085 ctaagcatgcgtttatttaacgtaacaattaactctttattttcttatctttccggaaaggttggaaagaagccgacagatgccatatca 16874174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 16580225 - 16580314
Alignment:
Q  2 ctaagcatgcgtttatttaacataacaattaactctttatttacttatctttcaggaaaggttggaaagaagcatgcagatgccatatca 91  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||  ||||   ||||||||||||||    
T  16580225 ctaagcatgcgtttatttaacataacaattaactctttatttacttatctttccggaaaggttgaaatcaagccgacagatgccatatca 16580314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 158 - 262
Target Start/End: Original strand, 16580419 - 16580523
Alignment:
Q  158 tcatcagtaacaatttccttcgcttgctcaagatcagtgacaaaataacattcaacggtcctcctgaaa-tgttaaggatcatgtcatggttgtcacaag 256  Q
    |||||||||| ||||||  |||||||||| ||||||||||||||| |||||||||| ||||||| |||| |||||||||||||||||||||||||||||     
T  16580419 tcatcagtaagaatttcagtcgcttgctcgagatcagtgacaaaa-aacattcaactgtcctcccgaaaatgttaaggatcatgtcatggttgtcacaat 16580517  T
Q  257 gcttct 262  Q
    ||||||    
T  16580518 gcttct 16580523  T

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Target: chr6; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 158 - 262
Target Start/End: Complemental strand, 16614961 - 16614857
Alignment:
Q  158 tcatcagtaacaatttccttcgcttgctcaagatcagtgacaaaataacattcaacggtcctcctgaaa-tgttaaggatcatgtcatggttgtcacaag 256  Q
    |||||||||| ||||||  |||||||||| ||||||||||||||| |||||||||| ||||||| |||| |||||||||||||||||||||||||||||     
T  16614961 tcatcagtaagaatttcagtcgcttgctcgagatcagtgacaaaa-aacattcaactgtcctcccgaaaatgttaaggatcatgtcatggttgtcacaat 16614863  T
Q  257 gcttct 262  Q
    ||||||    
T  16614862 gcttct 16614857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 16615155 - 16615066
Alignment:
Q  2 ctaagcatgcgtttatttaacataacaattaactctttatttacttatctttcaggaaaggttggaaagaagcatgcagatgccatatca 91  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||  ||||   ||||||||||||||    
T  16615155 ctaagcatgcgtttatttaacataacaattaactctttatttacttatctttccggaaaggttgaaatcaagccgacagatgccatatca 16615066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 395 - 535
Target Start/End: Original strand, 16572727 - 16572867
Alignment:
Q  395 tattgtcagtaagagtttaaagaatgacgagcttcatgtcagctgggaccaaccatctgtgtgcattgtgttccaaaatgttgaacactcaagggtgcag 494  Q
    ||||||||||| || | | | ||||||||||| | |||  || ||||| || ||||||| |||||||||||||| ||||||||||| ||| | |||||||    
T  16572727 tattgtcagtaggaatgtgatgaatgacgagcataatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcag 16572826  T
Q  495 gctttggcgttcaagttgacttagaaattatctatccttgc 535  Q
    |||||||||||| |||||||| |||||||||| ||||||||    
T  16572827 gctttggcgttcgagttgactgagaaattatccatccttgc 16572867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 395 - 535
Target Start/End: Original strand, 16580748 - 16580888
Alignment:
Q  395 tattgtcagtaagagtttaaagaatgacgagcttcatgtcagctgggaccaaccatctgtgtgcattgtgttccaaaatgttgaacactcaagggtgcag 494  Q
    ||||||||||| |||| | | |||| |||||| |||||  || ||||| || ||||||| |||||||||||||| ||||||||||| ||| | |||||||    
T  16580748 tattgtcagtaggagtgtgatgaattacgagcatcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcag 16580847  T
Q  495 gctttggcgttcaagttgacttagaaattatctatccttgc 535  Q
    |||||||||||| |||||||  |||||||||| ||||||||    
T  16580848 gctttggcgttcgagttgaccgagaaattatccatccttgc 16580888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 395 - 535
Target Start/End: Complemental strand, 16614632 - 16614492
Alignment:
Q  395 tattgtcagtaagagtttaaagaatgacgagcttcatgtcagctgggaccaaccatctgtgtgcattgtgttccaaaatgttgaacactcaagggtgcag 494  Q
    ||||||||||| |||| | | |||| |||||| |||||  || ||||| || ||||||| |||||||||||||| ||||||||||| ||| | |||||||    
T  16614632 tattgtcagtaggagtgtgatgaattacgagcatcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcag 16614533  T
Q  495 gctttggcgttcaagttgacttagaaattatctatccttgc 535  Q
    |||||||||||| |||||||  |||||||||| ||||||||    
T  16614532 gctttggcgttcgagttgaccgagaaattatccatccttgc 16614492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 395 - 535
Target Start/End: Original strand, 16874609 - 16874749
Alignment:
Q  395 tattgtcagtaagagtttaaagaatgacgagcttcatgtcagctgggaccaaccatctgtgtgcattgtgttccaaaatgttgaacactcaagggtgcag 494  Q
    ||||||||||| |||| | | |||||| |||| |||||  || ||||| || ||||||| |||||||||||||| ||||||||||| ||| | |||||||    
T  16874609 tattgtcagtaggagtgtgatgaatgatgagcatcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaactctctatggtgcag 16874708  T
Q  495 gctttggcgttcaagttgacttagaaattatctatccttgc 535  Q
    |||||||||||| | |||||| |||||||||| ||||||||    
T  16874709 gctttggcgttcgaattgactgagaaattatccatccttgc 16874749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 158 - 262
Target Start/End: Original strand, 16874279 - 16874383
Alignment:
Q  158 tcatcagtaacaatttccttcgcttgctcaagatcagtgacaaaataacattcaacggtcctcctgaaa-tgttaaggatcatgtcatggttgtcacaag 256  Q
    |||||||||| ||||||   | ||||||| ||||||||||||||| |||||||||||||||||| |||| ||||| |||||||||||||||||||||||     
T  16874279 tcatcagtaagaatttcagccacttgctcgagatcagtgacaaaa-aacattcaacggtcctcccgaaaatgttatggatcatgtcatggttgtcacaat 16874377  T
Q  257 gcttct 262  Q
    ||||||    
T  16874378 gcttct 16874383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 37 - 90
Target Start/End: Original strand, 16572274 - 16572327
Alignment:
Q  37 tttatttacttatctttcaggaaaggttggaaagaagcatgcagatgccatatc 90  Q
    ||||||||||||||||||||||||||||||||||||||   |||||||||||||    
T  16572274 tttatttacttatctttcaggaaaggttggaaagaagccgacagatgccatatc 16572327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 267 - 355
Target Start/End: Complemental strand, 16977403 - 16977314
Alignment:
Q  267 atgctgaagg-acaaaatcaaagaggtggcacttaggacatacttatttacgtcctcttcatcatatgattctttgagcgtggatcagct 355  Q
    |||||||||| | |||||||| |||| | |||||||||||||| ||||||| ||| |||||||| ||||||||| ||| |||||||||||    
T  16977403 atgctgaagggaaaaaatcaaggaggagacacttaggacatacctatttacctccccttcatcacatgattcttagagagtggatcagct 16977314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 101 - 159
Target Start/End: Original strand, 16874202 - 16874260
Alignment:
Q  101 atcagtgtatctagtatctgctatgctactggaagttcccaatattgcagccaatgttc 159  Q
    ||||||||||||| |||||| ||||||| ||||||||  ||||||||||||||||||||    
T  16874202 atcagtgtatctaatatctgttatgctattggaagttttcaatattgcagccaatgttc 16874260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 101 - 161
Target Start/End: Original strand, 16572356 - 16572416
Alignment:
Q  101 atcagtgtatctagtatctgctatgctactggaagttcccaatattgcagccaatgttcat 161  Q
    ||||||||||||| |||||| ||||||| ||||||||  |||||||||||||||| |||||    
T  16572356 atcagtgtatctaatatctgatatgctattggaagttttcaatattgcagccaatattcat 16572416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 101 - 161
Target Start/End: Original strand, 16580342 - 16580402
Alignment:
Q  101 atcagtgtatctagtatctgctatgctactggaagttcccaatattgcagccaatgttcat 161  Q
    ||||||||||||| |||||| ||||||| ||||||||  |||||||||||| |||||||||    
T  16580342 atcagtgtatctaatatctgttatgctattggaagttttcaatattgcagctaatgttcat 16580402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 16615038 - 16614978
Alignment:
Q  101 atcagtgtatctagtatctgctatgctactggaagttcccaatattgcagccaatgttcat 161  Q
    ||||||||||||| |||||| ||||||| ||||||||  |||||||||||| |||||||||    
T  16615038 atcagtgtatctaatatctgttatgctattggaagttttcaatattgcagctaatgttcat 16614978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 158 - 221
Target Start/End: Original strand, 16572433 - 16572495
Alignment:
Q  158 tcatcagtaacaatttccttcgcttgctcaagatcagtgacaaaataacattcaacggtcctcc 221  Q
    |||||||||| ||||||  |||||||||| ||||||||||||||| ||||||||||||| ||||    
T  16572433 tcatcagtaagaatttcagtcgcttgctcgagatcagtgacaaaa-aacattcaacggttctcc 16572495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 224 - 262
Target Start/End: Complemental strand, 16977530 - 16977492
Alignment:
Q  224 aaatgttaaggatcatgtcatggttgtcacaaggcttct 262  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  16977530 aaatgttaaggatcatgtcatggttgtaacaaggcttct 16977492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 16977759 - 16977698
Alignment:
Q  16 atttaacataacaattaactctttatttacttatctttcaggaaaggttggaaagaagcatg 77  Q
    |||||| |||| | |||||||||||||||||||||||| |||||||||  ||| ||||||||    
T  16977759 atttaaaataaaagttaactctttatttacttatcttttaggaaaggtgtgaaggaagcatg 16977698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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