View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11342_low_5 (Length: 560)
Name: NF11342_low_5
Description: NF11342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11342_low_5 |
 | |
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| [»] scaffold0710 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 523; Significance: 0; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 1 - 539
Target Start/End: Complemental strand, 51772600 - 51772062
Alignment:
| Q |
1 |
gtgtatattaatctgggacttaccttatagcggatcctacgcatttgacctttctgattaaagacttttattgatctgtcactgcaaaaggcaaccttct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51772600 |
gtgtatattaatctgggacttaccttatagcggatcctacgcatttgacctttctgattaaagacttttattgatctgtcactgcaaaaggcaaccttct |
51772501 |
T |
|
| Q |
101 |
cattggagatgaagaggagaccagctagaggaccagatgtggtggatagataacactgcgaaattttcaacagactctcgtcctcactcacactaaaata |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
51772500 |
cattggagatgaagaggagaccggctagagggccagatgtggtggatagataacactgcgaaattttcaacaggctctcgtcctcactcacactaaaata |
51772401 |
T |
|
| Q |
201 |
ccgcataaacactttctccactccacccacttgaagaatttgagcccctaagctcaattttctcttaattgtttcagaaatgtttgctctaagtcttact |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51772400 |
ccgcataaacactttctccactccacccacttgaagaatttgagcccctaagctcaattttctcttaattgtttcagaaatgtttgctctaagtcttact |
51772301 |
T |
|
| Q |
301 |
gaaatttaagaattatatataataggattagaaacgatcgagtaaatgactatatgaggagttcataaactgatatagatattgcagacaaaaggcatgg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51772300 |
gaaatttaagaattatatataataggattagaaacgatcgagtaaatgactatacgaggagttcataaactgatatagatattgcagacaaaaggcatgg |
51772201 |
T |
|
| Q |
401 |
acttcataaactatatatgcaataacaattggaaacacatctcagtcttacaagggtactcaccatgttcttggactttttgtgagagactatcagcctt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51772200 |
acttcataaactatatatgcaataacaattggaaacacatctcagtcttacaagggtactcaccatgttcttggactttttgtgagagactatcagcctt |
51772101 |
T |
|
| Q |
501 |
tctagcaagccttttcttgttcgaatttgttaaacctga |
539 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51772100 |
tctagcaagccttttcttgttcgaatttgttaaacctga |
51772062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 19 - 334
Target Start/End: Complemental strand, 51780438 - 51780133
Alignment:
| Q |
19 |
cttaccttatagcggatcctacgcatttgacctttctgattaaagacttttattgatctgtcactgcaaaaggcaaccttctcattggagatgaagagga |
118 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
51780438 |
cttaccttatagcggatcctacacatttgacctttctgattatagacttttattgatctgtcactgcaaaaggcaaccttttcattggagatgaagagga |
51780339 |
T |
|
| Q |
119 |
gaccagctagaggaccagatgtggtggatagataacactgcgaaattttcaacagactctcgtcctcactcacactaaaataccgcataaacactttctc |
218 |
Q |
| |
|
| ||||||||||| |||||||||||||| |||||||| || |||| |||||||| ||| |||||||||||||| ||||||| | ||| || |
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| T |
51780338 |
ggccagctagagggccagatgtggtggaaagataacagtgagaaactttcaaca----------ctctctcacactaaaatagtgcataaaaaatttatc |
51780249 |
T |
|
| Q |
219 |
cactccacccacttgaagaatttgagcccctaagctcaattttctcttaattgtttcagaaatgtttgctctaagtcttactgaaatttaagaattatat |
318 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||| || ||| | |||||||||||||||||||||| ||||||| |||||||| |||||||||| |
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|
| T |
51780248 |
cactccacccacttaaagaattttagcccctaagctcaacttcctccttattgtttcagaaatgtttgctcccagtcttaatgaaatttcagaattatat |
51780149 |
T |
|
| Q |
319 |
ataataggattagaaa |
334 |
Q |
| |
|
| |||||||||||||| |
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|
| T |
51780148 |
aaaataggattagaaa |
51780133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 16 - 307
Target Start/End: Complemental strand, 51808160 - 51807869
Alignment:
| Q |
16 |
ggacttaccttatagcggatcctacgcatttgacctttctgattaaagacttttattgatctgtcactgcaaaaggcaaccttctcattggagatgaaga |
115 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| |||||||||||||||| |
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|
| T |
51808160 |
ggacataccttatatcggatcctacgcatttgacctttctgattgaagacttttattgatctctcactgcagaaggcaaccttttcattggagatgaaga |
51808061 |
T |
|
| Q |
116 |
ggagaccagctagaggaccagatgtggtggatagataacactgcgaaattttcaacagactctcgtcctcactcacactaaaataccgcataaacacttt |
215 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||| |||| ||| | || ||||| | || ||||||||||||| || |||||||||| |
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|
| T |
51808060 |
gcagaccagctagaggaccagatgtggtggatagataacactgtgaaacttttgatagcctctctccttctgtcacactaaaatattgcgtaaacacttt |
51807961 |
T |
|
| Q |
216 |
ctccactccacccacttgaagaatttgagcccctaagctcaattttctcttaattgtttcagaaatgtttgctctaagtcttactgaaattt |
307 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||| ||| |||||||||| || ||| |||||||||| |
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|
| T |
51807960 |
ctccactccacccatttgaagaatttgagcccctaagctcaaagttctctttattgttttagatatgtttgctccaactctcactgaaattt |
51807869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 17 - 289
Target Start/End: Complemental strand, 51804206 - 51803934
Alignment:
| Q |
17 |
gacttaccttatagcggatcctacgcatttgacctttctgattaaagacttttattgatctgtcactgcaaaaggcaaccttctcattggagatgaagag |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||| ||||| ||||| ||||||||||||||||| |
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|
| T |
51804206 |
gacttaccttatagcggatcctacgcatttgacctttctgattgaagacttttattgttctctcactgcagaaggccaccttttcattggagatgaagag |
51804107 |
T |
|
| Q |
117 |
gagaccagctagaggaccagatgtggtggatagataacactgcgaaattttcaacagactctcgtcctcactcacactaaaataccgcataaacactttc |
216 |
Q |
| |
|
|||||||| ||||||||| ||||||||||| |||||||||||||||| ||| | || ||||| | || ||||||||||||||| || |||||| |||| |
|
|
| T |
51804106 |
gagaccagatagaggaccggatgtggtggaaagataacactgcgaaacttttgatagcctctctccttctctcacactaaaatactgcctaaacattttc |
51804007 |
T |
|
| Q |
217 |
tccactccacccacttgaagaatttgagcccctaagctcaattttctcttaattgtttcagaaatgtttgctc |
289 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |||| | ||||| ||||||| ||| |||||||||| |
|
|
| T |
51804006 |
tccactccacccatttgaagaatttgagcccctaagttcaacgtcctctttattgttttagatatgtttgctc |
51803934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 431 - 539
Target Start/End: Complemental strand, 51807751 - 51807643
Alignment:
| Q |
431 |
ggaaacacatctcagtcttacaagggtactcaccatgttcttggactttttgtgagagactatcagcctttctagcaagccttttcttgttcgaatttgt |
530 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||| |
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|
| T |
51807751 |
ggaaacacatctaagtcttacaagggtactcaccgtgttcttggactctttgtgagagactatcagccttcctagcaagtcttttcttgttcgaatttgt |
51807652 |
T |
|
| Q |
531 |
taaacctga |
539 |
Q |
| |
|
||||||||| |
|
|
| T |
51807651 |
taaacctga |
51807643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 444 - 539
Target Start/End: Complemental strand, 51780046 - 51779943
Alignment:
| Q |
444 |
agtcttacaagggtactcac----catgttcttggactttttgtgagagactatcagcctt----tctagcaagccttttcttgttcgaatttgttaaac |
535 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
51780046 |
agtcttacaagggtactcactcaccatgttcttggactttttgtgagagactatcagccttcctagctagcaagccttttcttgtttgaatttgttaaac |
51779947 |
T |
|
| Q |
536 |
ctga |
539 |
Q |
| |
|
|||| |
|
|
| T |
51779946 |
ctga |
51779943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 444 - 500
Target Start/End: Complemental strand, 51803852 - 51803796
Alignment:
| Q |
444 |
agtcttacaagggtactcaccatgttcttggactttttgtgagagactatcagcctt |
500 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||| |||||||||||||||| ||||| |
|
|
| T |
51803852 |
agtcttactagggtactcaccatgttcttgaactctttgtgagagactatcggcctt |
51803796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 155
Target Start/End: Original strand, 12196136 - 12196221
Alignment:
| Q |
70 |
attgatctgtcactgcaaaaggcaaccttctcattggagatgaagaggagaccagctagaggaccagatgtggtggatagataaca |
155 |
Q |
| |
|
|||||||| ||||| |||||||||| || | | | || |||||||| || || ||||||||||||||||| || ||||||||||| |
|
|
| T |
12196136 |
attgatctctcactacaaaaggcaattttattagttgatatgaagagtaggcctgctagaggaccagatgttgttgatagataaca |
12196221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 51761472 - 51761423
Alignment:
| Q |
130 |
ggaccagatgtggtggatagataacactgcgaaattttcaacagactctc |
179 |
Q |
| |
|
||||||||||||||||| |||||||| || |||| ||||||||| ||||| |
|
|
| T |
51761472 |
ggaccagatgtggtggacagataacagtgtgaaactttcaacagcctctc |
51761423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0710 (Bit Score: 164; Significance: 2e-87; HSPs: 2)
Name: scaffold0710
Description:
Target: scaffold0710; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 19 - 334
Target Start/End: Complemental strand, 7082 - 6775
Alignment:
| Q |
19 |
cttaccttatagcggatcctacgcatttgacctttctgattaaagacttttattgatctgtcactgcaaaaggcaaccttctcattggagatgaagagga |
118 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
7082 |
cttaccttatagcggatcctacacatttgacctttctgattatagacttttattgatctgtcactgcaaaaggcaaccttttcattggagatgaagagga |
6983 |
T |
|
| Q |
119 |
gaccagctag--aggaccagatgtggtggatagataacactgcgaaattttcaacagactctcgtcctcactcacactaaaataccgcataaacactttc |
216 |
Q |
| |
|
| |||||||| || |||||||||||||| |||||||| || |||| |||||||| ||| |||||||||||||| ||||||| | ||| |
|
|
| T |
6982 |
ggccagctaggaggggccagatgtggtggaaagataacagtgagaaactttcaaca----------ctctctcacactaaaatagtgcataaaaaattta |
6893 |
T |
|
| Q |
217 |
tccactccacccacttgaagaatttgagcccctaagctcaattttctcttaattgtttcagaaatgtttgctctaagtcttactgaaatttaagaattat |
316 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||||||| || ||| | |||||||||||||||||||||| ||||||| |||||||| |||||||| |
|
|
| T |
6892 |
tccactccacccacttaaagaattttagcccctaagctcaacttcctccttattgtttcagaaatgtttgctcccagtcttaatgaaatttcagaattat |
6793 |
T |
|
| Q |
317 |
atataataggattagaaa |
334 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
6792 |
ataaaataggattagaaa |
6775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0710; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 444 - 539
Target Start/End: Complemental strand, 6688 - 6585
Alignment:
| Q |
444 |
agtcttacaagggtactcac----catgttcttggactttttgtgagagactatcagcctt----tctagcaagccttttcttgttcgaatttgttaaac |
535 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
6688 |
agtcttacaagggtactcactcaccatgttcttggactttttgtgagagactatcagccttcctagctagcaagccttttcttgtttgaatttgttaaac |
6589 |
T |
|
| Q |
536 |
ctga |
539 |
Q |
| |
|
|||| |
|
|
| T |
6588 |
ctga |
6585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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