View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11342_low_6 (Length: 554)
Name: NF11342_low_6
Description: NF11342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11342_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 490; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 17 - 526
Target Start/End: Original strand, 52720383 - 52720892
Alignment:
| Q |
17 |
gagtagcttggtaagcaatggccgcgtggatcggcatggtaggattgctgataaaagaacaactggaggatggaaggcagctcccttcatcataagtatg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52720383 |
gagtagcttggtaagcaatggccgcgtggatcggcatggtaggattgctgataaaagaacaactggaggatggaaggcagctcccttcatcataagtatg |
52720482 |
T |
|
| Q |
117 |
aactaaacactacattatgaaattatacagaatcatcacaatgtattatgtacacataattttaatatatgataggtattaacttggcactttttgatga |
216 |
Q |
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||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52720483 |
aactaaatactacattattacattatacagaatcatcacaatgtattatgtacacataattttaatatatgataggtattaacttggcactttttgatga |
52720582 |
T |
|
| Q |
217 |
tctttcagtgaacgaggtgatagagaggttggcgttaaattcgattgcagtgaatatgacggcttacttggtatttcaaatgcatcaatcccttccggat |
316 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
52720583 |
tctttcagtgaacgaggtgatagagaggttggcgttaaatgcgattgcagtgaatatgacggcttacttggtatttcaaatgcatcaatcacttccggat |
52720682 |
T |
|
| Q |
317 |
gctgctactcatgtcacagactgggctggagctgcctatgtactcaccctctttggagcatttctagcagatgcttatttgggtcgcttcaaaactatta |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52720683 |
gctgctactcatgtcacagactgggctggagctgcctatgtactcaccctctttggagcatttctagcagatgcttatttgggtcgcttcaaaactatta |
52720782 |
T |
|
| Q |
417 |
ttgttttctcagcaatctatgccgtggtaactaatttttaaacattagtgaagtaatcgtagtttttgtgaaaatcatcattctctagagttaagtaatt |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52720783 |
ttgttttctcagcaatctatgccgtggtaactaatttttaaacattagtgaagtaatcgtagtttttgtgaaaatcatcattctctagagttaagtaatt |
52720882 |
T |
|
| Q |
517 |
caaatcaact |
526 |
Q |
| |
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|||||||||| |
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| T |
52720883 |
caaatcaact |
52720892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 17 - 537
Target Start/End: Original strand, 52711493 - 52712039
Alignment:
| Q |
17 |
gagtagcttggtaagcaatggccgcgtggatcggcatggtaggattgctgataaaagaacaactggaggatggaaggcagctcccttcatcataagtatg |
116 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
52711493 |
gagtagcttggtaagcaatggccgtgtggatcggcaaggtaggattgctaataaaagaacaaccggaggatggaaggcagctcccttcatcataagtatg |
52711592 |
T |
|
| Q |
117 |
aactaaacactacattatgaaattatacagaatcatcacaatgtattatgtacacataat-----tttaatatatgataggtatta------acttggca |
205 |
Q |
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||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||| | || |||||| ||||||| |
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| T |
52711593 |
aactaaatactacattattaaattatacagaatcatcacaatgtattatgtacacatagtatagttttaatatacggtatgtattagcaataacttggcc |
52711692 |
T |
|
| Q |
206 |
ctttttgatgatctttcagtgaacgaggtgatagagaggttggcgttaaattcgattgcagtgaatatgacggcttacttggtatttcaaatgcatcaat |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52711693 |
ctttttgatgatctttcagtgaacgaggtgatagagaggttggcgttctttgcgattgcagtgaatatgacggcttacttggtatttcaaatgcatcaat |
52711792 |
T |
|
| Q |
306 |
cccttccggatgctgctactcatgtcacagactgggctggagctgcctatgtactcaccctctttggagcatttctagcagatgcttatttgggtcgctt |
405 |
Q |
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| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
52711793 |
cgcttccagatgctgctactcatgtcacagactggattggagctgcctatgtactcaccctctttggagcatttctagcagatgcttattttggtcgctt |
52711892 |
T |
|
| Q |
406 |
caaaactattattgttttctcagcaatctatgccgtggtaactaatttttaaac------attagtgaagtaatcgtagtttttgtgaaaatcatcattc |
499 |
Q |
| |
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||||||||| |||||||||||||| |||||||||||||||||||| |||||||| |||| |||||||||| |||||||||||||||||||||||| |
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| T |
52711893 |
caaaactatcattgttttctcagccatctatgccgtggtaactaaattttaaacattaaaattaatgaagtaatcatagtttttgtgaaaatcatcattc |
52711992 |
T |
|
| Q |
500 |
tctag---------agttaagtaattcaaatcaactgatgatatcat |
537 |
Q |
| |
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||||| ||| ||||||||||||||||||||||||||||| |
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| T |
52711993 |
tctagagtgtcattagtgaagtaattcaaatcaactgatgatatcat |
52712039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 20 - 129
Target Start/End: Original strand, 52697836 - 52697945
Alignment:
| Q |
20 |
tagcttggtaagcaatggccgcgtggatcggcatggtaggattgctgataaaagaacaactggaggatggaaggcagctcccttcatcataagtatgaac |
119 |
Q |
| |
|
||||||||| || |||| || |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||| |
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| T |
52697836 |
tagcttggtgagtaatgatcgtgtggataggcatggtaggattgctgataaacgaacaactggaggatggaaggcagctccctatatcatatgtatgaaa |
52697935 |
T |
|
| Q |
120 |
taaacactac |
129 |
Q |
| |
|
|||| ||||| |
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|
| T |
52697936 |
taaatactac |
52697945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 309 - 446
Target Start/End: Original strand, 52698126 - 52698263
Alignment:
| Q |
309 |
ttccggatgctgctactcatgtcacagactgggctggagctgcctatgtactcaccctctttggagcatttctagcagatgcttatttgggtcgcttcaa |
408 |
Q |
| |
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|||| ||||||||||||||||||||||||||| |||||||||| ||||| ||||| |||||||||| ||| | ||||||||||| | ||||| || | |
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| T |
52698126 |
ttccagatgctgctactcatgtcacagactggactggagctgcttatgtcctcactatctttggagcgtttattgcagatgcttaccttggtcgatttag |
52698225 |
T |
|
| Q |
409 |
aactattattgttttctcagcaatctatgccgtggtaa |
446 |
Q |
| |
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||| || ||||||||||| | |||||||| ||||||| |
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| T |
52698226 |
aaccatcattgttttctctaccatctatgctgtggtaa |
52698263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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