View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11342_low_9 (Length: 508)
Name: NF11342_low_9
Description: NF11342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11342_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 29 - 493
Target Start/End: Complemental strand, 32845149 - 32844685
Alignment:
| Q |
29 |
gaaagataggttttatgaggcaaagaagatggaaatgaaggaattcaaggaaatggcggagaagtttgtgatgaaatgtgaatttgaagttcagagtttg |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32845149 |
gaaagataggttttatgaggcaaagaagatggaaatgaaggaattcaaggaattggcggagaagtttgtgatgaaatgtgaatttgaagttcagagtttg |
32845050 |
T |
|
| Q |
129 |
aggaatgcagtcaatgaggtaactgtaaaatcatcaacttcatacaatttttctgtttcattttgtttatattattaaattcttaatcatgtgtccattt |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32845049 |
aggaatgcagtcaatgaggtaactgtaaaatcatcaacttcatacaatttttctgtttcattttgtttatattattaaattcttaatcatgtgtccattt |
32844950 |
T |
|
| Q |
229 |
atttatgctttaaaaattaagttaaacttccaataatcatgcttttcaagcttccaggcacctagaaattaagcttaatttttagttttagatataatca |
328 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32844949 |
atttatgctttcaaaattaagttaaacttccaataatcatgcttttcaagcttccaggcacctagaaattaagcttaatttttagttttagatataatca |
32844850 |
T |
|
| Q |
329 |
catatgtagcgcactgacactatatccaaggcgtgttcgagtgtctaatattgtcgtgtatataagtgtcggcatttttggttacatataatcattaata |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32844849 |
catatgtagcgcactgacactatatccaaggcgtgttcgagtgtctaatattgtcgtgtatataagtgtcggcatttttggttacatataatcattaata |
32844750 |
T |
|
| Q |
429 |
ttttcttaaactgttatcggtatataagtctcggtgttagtgtcgtgtatctgttgtccatttat |
493 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32844749 |
ttttcttaaactgttatcggtatataagtctcggtgttagtgtcgtgtatctgttgtccatttat |
32844685 |
T |
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