View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11343_high_1_N (Length: 353)
Name: NF11343_high_1_N
Description: NF11343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11343_high_1_N |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 72 - 353
Target Start/End: Original strand, 51433585 - 51433867
Alignment:
| Q |
72 |
ataattttacttaacttttagcctaactctagattactaaagtataggattaaaatcaaaaatacatatatgatatgagttatgagagaattaccagtta |
171 |
Q |
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| T |
51433585 |
ataattttacttaactttaagccgaactctagattactaaagtataggattaaaaccaaaaatacatatatgatatgagttatgagagaattaccagtta |
51433684 |
T |
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| Q |
172 |
gcagcagagaaatgtttcacggactcttgatcactgatgatgttaatgtcaacattattgatactattagaagtagtcatggctaagaaagaataaattg |
271 |
Q |
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| T |
51433685 |
gcagcagagaaatgtttcacggactcttgatcactgatgctgttaatgtcaatattattgatactattagaagtagtcatggctaagaaagaataaactg |
51433784 |
T |
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| Q |
272 |
aagaagataactcaaa-ttaaacaagtaaatggtttgtatggttagggagagttatatttgaaagctgaatttagttgtattg |
353 |
Q |
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| T |
51433785 |
aagaagataacacaaatttaaacaagtaaattgtttgtatggttagggagagttatatttgaaagctgagtttagttgtattg |
51433867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 49
Target Start/End: Original strand, 51433557 - 51433587
Alignment:
| Q |
19 |
gtataaatagaaatatttagcaagacacata |
49 |
Q |
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| T |
51433557 |
gtataaatagaaatatttagcaagacacata |
51433587 |
T |
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