View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11345_low_2 (Length: 509)
Name: NF11345_low_2
Description: NF11345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11345_low_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 459; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 6 - 497
Target Start/End: Complemental strand, 1414512 - 1414021
Alignment:
| Q |
6 |
atgagatggacatcagaagctcttcctgatatgtttccaaagaagcttattccattaggaggttgaacacttgtatatgttgcatatatagttccagtat |
105 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1414512 |
atgagacggccatcagaagctcttcctgatatgtttccaaagaagcttattccattaggaggttgaacacttgtatatgttgcatatatagttccagtat |
1414413 |
T |
|
| Q |
106 |
ctgaatttgagtcaccaaagttataaattgcagggtacacacatttgtcacttgaaacttgaataaatttacatgtcacatacaggttgaaacaccaaag |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1414412 |
ctgaatttgagtcaccaaagttataaattgcagggtacacacatttgtcacttgaaacttgaataaatttacatgtcacatacaggttgaaacaccaaag |
1414313 |
T |
|
| Q |
206 |
tacatgaattaacctcatgaaattcatgaggctaattcatagaaattttaagttgtacactaatatataaacaacgacaattttgtcaaaacgtaaattt |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1414312 |
tacatgaattaacctcatgaaattcatgaggctaattcatagaaattttaagttgtacactaatatataaacaatgacaattttgtcaaaacgtaaattt |
1414213 |
T |
|
| Q |
306 |
gacataatgtgtttcatgctgtatttacggatcatgctagaatgctttgggacaccatgcttttggatcaaacacttgtgagnnnnnnntgcctaacaat |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1414212 |
gacataatgtgtttcatgctgtatttacggatcatgctagaatgctttgggacaccatgcttttggatcaaacacttgtgagaaaaaaatgcctaacaat |
1414113 |
T |
|
| Q |
406 |
agctttgagacacgtgttggataaaaagacagagagatgggattgacacaaacattagacaatggtaatcttttttacggtactaatgatgt |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1414112 |
agctttgagacacgtgttggataaaaagacagagagatgggattgacacaaacattagacaatggtaatcttttttacggtactaatgatgt |
1414021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 6 - 245
Target Start/End: Complemental strand, 1420058 - 1419822
Alignment:
| Q |
6 |
atgagatggacatcagaagctcttcctgatatgtttccaaagaagcttattccattaggaggttgaacacttgtatatgttgcatatatagttccagtat |
105 |
Q |
| |
|
|||||| || ||||||||||||| |||||||||||||||||| ||||| ||||||||||||||| || | | ||||||||| ||||||||||| |
|
|
| T |
1420058 |
atgagacggccatcagaagctctccctgatatgtttccaaag---cttatgccattaggaggttgattacataagaaagttgcatatgcagttccagtat |
1419962 |
T |
|
| Q |
106 |
ctgaatttgagtcaccaaagttataaattgcagggtacacacatttgtcacttgaaacttgaataaatttacatgtcacatacaggttgaaacaccaaag |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1419961 |
ctgaatttgagtcaccaaagttataaattgcagggtacacacattcatgacttgaaacttgaataaatgtacatgtcacatacaggttgaaacaccaaag |
1419862 |
T |
|
| Q |
206 |
tacatgaattaacctcatgaaattcatgaggctaattcat |
245 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1419861 |
tacatgaattaacctcatagaattcatgaggctaattcat |
1419822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 6 - 152
Target Start/End: Complemental strand, 1411136 - 1410990
Alignment:
| Q |
6 |
atgagatggacatcagaagctcttcctgatatgtttccaaagaagcttattccattaggaggttgaacacttgtatatgttgcatatatagttccagtat |
105 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||| |||||||||||| |||||| |||| |
|
|
| T |
1411136 |
atgagacggccatcagaagctcttcctgatatgtttccaaagaagcttattccgttaggagattgaacacctgtaaatgttgcatatacagttccggtat |
1411037 |
T |
|
| Q |
106 |
ctgaatttgagtcaccaaagttataaattgcagggtacacacatttg |
152 |
Q |
| |
|
| |||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
1411036 |
ccgaatttgaatcaccaaagttataaattgcagggtacacacatttg |
1410990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 151
Target Start/End: Complemental strand, 1408244 - 1408109
Alignment:
| Q |
16 |
catcagaagctcttcctgatatgtttccaaagaagcttattccattaggaggttgaacacttgtatatgttgcatatatagttccagtatctgaatttga |
115 |
Q |
| |
|
|||||||||||||||||| || |||||||| ||||||| ||||||||||| |||| ||| ||| |||||| | | |||||||||||||||||| |
|
|
| T |
1408244 |
catcagaagctcttcctgtggtgcttccaaagtagcttataccattaggaggcgtaacagctgtgtatattgcatttgctgctccagtatctgaatttga |
1408145 |
T |
|
| Q |
116 |
gtcaccaaagttataaattgcagggtacacacattt |
151 |
Q |
| |
|
||||||||| || ||||||||||||||| ||||||| |
|
|
| T |
1408144 |
gtcaccaaaattgtaaattgcagggtactcacattt |
1408109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 153 - 234
Target Start/End: Complemental strand, 1410965 - 1410884
Alignment:
| Q |
153 |
tcacttgaaacttgaataaatttacatgtcacatacaggttgaaacaccaaagtacatgaattaacctcatgaaattcatga |
234 |
Q |
| |
|
|||||||| |||||||||||| |||||| |||||| || |||||||||||||||| |||||||| |||||| ||||||||| |
|
|
| T |
1410965 |
tcacttgagacttgaataaatgtacatgccacataaagattgaaacaccaaagtatatgaattagcctcatagaattcatga |
1410884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 232
Target Start/End: Complemental strand, 1408080 - 1408010
Alignment:
| Q |
162 |
acttgaataaatttacatgtcacatacaggttgaaacaccaaagtacatgaattaacctcatgaaattcat |
232 |
Q |
| |
|
|||||||| ||| || |||||||| |||| |||||| ||||||||||||||||||| ||||| ||||||| |
|
|
| T |
1408080 |
acttgaatgaatgtaaatgtcacacacagattgaaaaaccaaagtacatgaattaatctcatagaattcat |
1408010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 26 - 151
Target Start/End: Complemental strand, 3600632 - 3600507
Alignment:
| Q |
26 |
tcttcctgatatgtttccaaagaagcttattccattaggaggttgaacacttgtatatgttgcatatatagttccagtatctgaatttgagtcaccaaag |
125 |
Q |
| |
|
||||||||| ||| |||||||||||||||| ||||||||| | | |||| || |||||||||| || ||||||||||||||| |||||||||||| |
|
|
| T |
3600632 |
tcttcctgagatgcttccaaagaagcttataccattaggatgctcaacagctgccattgttgcatatccagctccagtatctgaattggagtcaccaaag |
3600533 |
T |
|
| Q |
126 |
ttataaattgcagggtacacacattt |
151 |
Q |
| |
|
|| || ||||| ||||| |||||||| |
|
|
| T |
3600532 |
ttgtatattgctgggtagacacattt |
3600507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 151
Target Start/End: Complemental strand, 14339499 - 14339374
Alignment:
| Q |
26 |
tcttcctgatatgtttccaaagaagcttattccattaggaggttgaacacttgtatatgttgcatatatagttccagtatctgaatttgagtcaccaaag |
125 |
Q |
| |
|
||||||||| ||| |||||||||||||||| ||||||||| | |||| || |||||||||| || ||||||||||||||| |||||||||||| |
|
|
| T |
14339499 |
tcttcctgagatgcttccaaagaagcttataccattaggatactcaacagctgccgttgttgcatatccagctccagtatctgaattggagtcaccaaag |
14339400 |
T |
|
| Q |
126 |
ttataaattgcagggtacacacattt |
151 |
Q |
| |
|
|| || ||||| ||||| |||||||| |
|
|
| T |
14339399 |
ttgtatattgctgggtagacacattt |
14339374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University