View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11345_low_3 (Length: 496)

Name: NF11345_low_3
Description: NF11345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11345_low_3
NF11345_low_3
[»] chr2 (1 HSPs)
chr2 (207-496)||(17196414-17196703)


Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 207 - 496
Target Start/End: Original strand, 17196414 - 17196703
Alignment:
Q  207 ccctaaccggcaagagagagaaggccaaacgaggttatgattagcgagccaatcataaagaacaggaacaagagatttccattgagagtacttctcatca 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17196414 ccctaaccggcaagagagagaaggccaaacgaggttatgattagcaagccaatcataaagaacaggaacaagagatttccattgagagtacttctcatca 17196513  T
Q  307 acagaagcttgttgttgctgctgctgatgaagctgttgctgttgcttttccttcttcgattctctcggtgtcttcacttgtgatggttcttctctcttgt 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  17196514 acagaagcttgttgttgctgctgctgatgaagctgttgctgttgcttttccttcttcgattctctcggtgacttcacttgtgatggttcttctctcttgt 17196613  T
Q  407 cttccttgggtttaggtttgcgtcctcttgtctccttcttcttcacggcgccggttgagggtggtgtctccatttctcacgctctgtgct 496  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  17196614 cttccttgggtttaggtttgcgtcctcttgtctccttcttcttcacggcgccggttgagggtggtgtctccatttctcactctctgtgct 17196703  T

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