View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11346_high_10 (Length: 221)
Name: NF11346_high_10
Description: NF11346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11346_high_10 |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 162; Significance: 1e-86; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 12 - 197
Target Start/End: Complemental strand, 5380637 - 5380452
Alignment:
| Q |
12 |
agcaaaggcagcagccccacgaagagcctctctccatttcggcgtcttatctttcttcttcttcgaaagtttgctcaagagactttcaaaagcttgtcca |
111 |
Q |
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| T |
5380637 |
agcaaaggcagcagccccatgaagagcctctctccatttcagcgtcttatctttcttcttcttcgaaagtttgctcaagagactttcaaaagcttgtcca |
5380538 |
T |
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| Q |
112 |
aactcacgagtttggttacgtacctcagagggatcaacatcatagaacaccggtagcactatctgtgctatggttctgtgacactc |
197 |
Q |
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| T |
5380537 |
aactcaccagtttggtgacgtacctccaagggatcaacatcatagaacaccggtagcactatctgtgctatggttctgtgacactc |
5380452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 68 - 203
Target Start/End: Original strand, 5692812 - 5692947
Alignment:
| Q |
68 |
tcttcttcgaaagtttgctcaagagactttcaaaagcttgtccaaactcacgagtttggttacgtacctcagagggatcaacatcatagaacaccggtag |
167 |
Q |
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| T |
5692812 |
tcttctttgaaattctgctcaagagactttggaacgcttttccaaactcacctgtttggtgtcgtacatctgaaggatcaacatcatagaacaccggcaa |
5692911 |
T |
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| Q |
168 |
cactatctgtgctatggttctgtgacactccattat |
203 |
Q |
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| T |
5692912 |
cactatctgccctatagttctgcgacactccattat |
5692947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 108 - 204
Target Start/End: Original strand, 5107709 - 5107805
Alignment:
| Q |
108 |
tccaaactcacgagtttggttacgtacctcagagggatcaacatcatagaacaccggtagcactatctgtgctatggttctgtgacactccattatc |
204 |
Q |
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| T |
5107709 |
tccaaactcaccagtttgatgacgtacttctgagggatcaacatcatagaacaccggaagcaccacctgccctatgcttctgcgacactccattatc |
5107805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 67 - 203
Target Start/End: Complemental strand, 5174359 - 5174223
Alignment:
| Q |
67 |
ttcttcttcgaaagtttgctcaagagactttcaaaagcttgtccaaactcacgagtttggttacgtacctcagagggatcaacatcatagaacaccggta |
166 |
Q |
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| T |
5174359 |
ttcttctttgaaattctgctcaagagactttggaacgcttttccaaactcacctgtttggtgtcgtacatccgaaggatcaacatcatagaacaccggca |
5174260 |
T |
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| Q |
167 |
gcactatctgtgctatggttctgtgacactccattat |
203 |
Q |
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| T |
5174259 |
acactatctgccctatagttctgcgacatttcattat |
5174223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 67 - 203
Target Start/End: Complemental strand, 5276105 - 5275969
Alignment:
| Q |
67 |
ttcttcttcgaaagtttgctcaagagactttcaaaagcttgtccaaactcacgagtttggttacgtacctcagagggatcaacatcatagaacaccggta |
166 |
Q |
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| T |
5276105 |
ttcttctttgaaattctgctcaagagactttggaacgcttttccaaactcacctgtttggtgtcgtacatctgaaggatcaacatcatagaacaccggca |
5276006 |
T |
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| Q |
167 |
gcactatctgtgctatggttctgtgacactccattat |
203 |
Q |
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| T |
5276005 |
acactatctgccctatagttctgcgacatttcattat |
5275969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 205
Target Start/End: Complemental strand, 5093094 - 5093013
Alignment:
| Q |
124 |
tggttacgtacctcagagggatcaacatcatagaacaccggtagcactatctgtgctatggttctgtgacactccattatct |
205 |
Q |
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| T |
5093094 |
tggtgacgtacttcagagggatctacatcgtagaacactggcacaactatctgccctatggttcgctgacactccattatct |
5093013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 11770 - 11821
Alignment:
| Q |
14 |
caaaggcagcagccccacgaagagcctctctccatttcggcgtcttatcttt |
65 |
Q |
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| T |
11770 |
caaagccagtagcaccacgaagagcctctctccatttcggcgacttatcttt |
11821 |
T |
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