View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11346_high_5 (Length: 425)

Name: NF11346_high_5
Description: NF11346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11346_high_5
NF11346_high_5
[»] chr7 (4 HSPs)
chr7 (11-410)||(19910157-19910558)
chr7 (204-249)||(6037062-6037107)
chr7 (200-248)||(47236173-47236221)
chr7 (57-113)||(6036865-6036921)
[»] chr8 (6 HSPs)
chr8 (14-190)||(33828267-33828446)
chr8 (12-236)||(16366660-16366892)
chr8 (134-248)||(36734699-36734813)
chr8 (134-239)||(26534561-26534665)
chr8 (26-120)||(42664141-42664238)
chr8 (12-52)||(26534436-26534476)
[»] scaffold0005 (1 HSPs)
scaffold0005 (11-248)||(270295-270533)
[»] chr5 (3 HSPs)
chr5 (14-184)||(14144810-14144987)
chr5 (11-239)||(15470948-15471178)
chr5 (12-118)||(35951919-35952028)
[»] chr2 (10 HSPs)
chr2 (11-248)||(29685999-29686239)
chr2 (12-121)||(18061115-18061227)
chr2 (57-126)||(21017204-21017273)
chr2 (27-120)||(19865946-19866039)
chr2 (27-120)||(19870847-19870940)
chr2 (27-120)||(19875748-19875841)
chr2 (25-120)||(33226620-33226718)
chr2 (32-119)||(45040067-45040157)
chr2 (200-239)||(43559937-43559976)
chr2 (12-119)||(43559685-43559795)
[»] chr1 (4 HSPs)
chr1 (11-239)||(31066954-31067185)
chr1 (27-115)||(44508214-44508305)
chr1 (200-239)||(15962583-15962622)
chr1 (200-248)||(7093804-7093852)
[»] chr3 (6 HSPs)
chr3 (14-121)||(46091797-46091907)
chr3 (12-120)||(28521516-28521627)
chr3 (17-118)||(33087858-33087961)
chr3 (12-126)||(28050714-28050831)
chr3 (12-126)||(28146771-28146890)
chr3 (88-120)||(45483757-45483789)
[»] chr4 (9 HSPs)
chr4 (11-119)||(29857392-29857503)
chr4 (62-120)||(20447756-20447814)
chr4 (27-120)||(55250518-55250614)
chr4 (200-248)||(29857274-29857322)
chr4 (32-126)||(1101069-1101166)
chr4 (57-107)||(46964062-46964112)
chr4 (200-238)||(47668748-47668786)
chr4 (200-236)||(20447611-20447647)
chr4 (27-110)||(47668906-47668992)
[»] chr6 (1 HSPs)
chr6 (12-110)||(4017104-4017205)


Alignment Details
Target: chr7 (Bit Score: 338; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 11 - 410
Target Start/End: Original strand, 19910157 - 19910558
Alignment:
Q  11 cagagatgatattataaaaatattgataatctattttgtttagtgtttatggataaatttgacttctaaaaacaccttagagcacaacttttataaataa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19910157 cagagatgatattataaaaatattgataatctattttgtttagtgtttatggataaatttgacttctaaaaacaccttagagcacaacttttataaataa 19910256  T
Q  111 ctattgttagcgtttannnnnnn-gttgcagtttcattaattatgagtaaaattaattaagtttcgtatattagtgtttaannnnnnnnn-cttctttat 208  Q
    ||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||    
T  19910257 ctattgttagcgtttattttttttgttgcagtttcattaattatgagtaaaattaattaagtttcgtatattagtgtttaatttttttcttcttctttat 19910356  T
Q  209 atttggccccctcgtaaaaatagtgctagctacgtcgctgtgcataagaacactttctcatatctgacagagtgttttaatgtgtaatatgcaggtaaaa 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19910357 atttggccccctcgtaaaaatagtgctagctacgtcgctgtgcataagaacactttctcatatctgacagagtgttttaatgtgtaatatgcaggtaaaa 19910456  T
Q  309 aatgaaacatgggctttgtggacttggtatcgcaatcaggactcttacaaggaagttggagatcaaatttacatagttagacaacctgatatatgtcctt 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19910457 aatgaaacatgggctttgtggacttggtatcgcaatcaggactcttacaaggaagttggagatcaaatttacatagttagacaacctgatatatgtcctt 19910556  T
Q  409 tt 410  Q
    ||    
T  19910557 tt 19910558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 204 - 249
Target Start/End: Original strand, 6037062 - 6037107
Alignment:
Q  204 tttatatttggccccctcgtaaaaatagtgctagctacgtcgctgt 249  Q
    ||||||||||||| |||||||||||| ||||||||| |||||||||    
T  6037062 tttatatttggcctcctcgtaaaaattgtgctagcttcgtcgctgt 6037107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 248
Target Start/End: Original strand, 47236173 - 47236221
Alignment:
Q  200 cttctttatatttggccccctcgtaaaaatagtgctagctacgtcgctg 248  Q
    ||||||||||||||||||||||||||||||  |||||||| || |||||    
T  47236173 cttctttatatttggccccctcgtaaaaattatgctagcttcgccgctg 47236221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 6036865 - 6036921
Alignment:
Q  57 ttatggataaatttgacttctaaaaacaccttagagcacaacttttataaataacta 113  Q
    |||||||||||||| |||||| ||||| |  |||||  |||||||||||||||||||    
T  6036865 ttatggataaattttacttcttaaaactcaatagagttcaacttttataaataacta 6036921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 106; Significance: 7e-53; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 14 - 190
Target Start/End: Original strand, 33828267 - 33828446
Alignment:
Q  14 agatgatattataaaaatattgataatctattttgtttagtgt---ttatggataaatttgacttctaaaaacaccttagagcacaacttttataaataa 110  Q
    ||||||||||||||||||||||||||||||||| |||||||||   ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  33828267 agatgatattataaaaatattgataatctatttagtttagtgtcaattatggataaatttgacttctaaaaactccttagagctcaacttttataaataa 33828366  T
Q  111 ctattgttagcgttta-nnnnnnngttgcagtttcattaattatgagtaaaattaattaagtttcgtatattagtgtttaa 190  Q
    ||||||||||| ||||        |||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||    
T  33828367 ctattgttagcttttattttctttgttgcagtttcattaaatatgagt-aaattaattaagtttcatatattagtgtttaa 33828446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 12 - 236
Target Start/End: Complemental strand, 16366892 - 16366660
Alignment:
Q  12 agagatgatattataaaaatattgataatctattttgtttagtgt---ttatggataaatttgacttctaaaaacaccttagagcacaacttttataaat 108  Q
    ||||||||||||||||||||||||||||||||||| |||||||||   |||| ||||||||||| || |||||||  ||||| || ||||||||||||||    
T  16366892 agagatgatattataaaaatattgataatctatttagtttagtgttaattatagataaatttgaattttaaaaacttcttagggctcaacttttataaat 16366793  T
Q  109 aactattgttagc-----gtttannnnnnngttgcagtttcattaattatgagtaaaattaattaagtttcgtatattagtgtttaannnnnnnnncttc 203  Q
    ||||||||||| |      ||||       ||||||||||| |||| |||||||||||||||||||||||| ||||||| |||||||         ||||    
T  16366792 aactattgttatcttttattttatttttttgttgcagtttcgttaaatatgagtaaaattaattaagtttcatatattaatgtttaattttttcttcttc 16366693  T
Q  204 tttatatttggccccctcgtaaaaatagtgcta 236  Q
    |||||||||| ||||||| ||||||||||||||    
T  16366692 tttatatttgaccccctcataaaaatagtgcta 16366660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 134 - 248
Target Start/End: Original strand, 36734699 - 36734813
Alignment:
Q  134 gttgcagtttcattaattatgagtaaaattaattaagtttcgtatattagtgtttaannnnnnnnncttctttatatttggccccctcgtaaaaatagtg 233  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||         ||||||||||||| |||| |||||||||||||||    
T  36734699 gttgcagtttcattaaatattagtaaaattaattaagtttcgtatattagtgtttaatttgtttttcttctttatatttagccctctcgtaaaaatagtg 36734798  T
Q  234 ctagctacgtcgctg 248  Q
    |||||| || |||||    
T  36734799 ctagcttcgccgctg 36734813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 134 - 239
Target Start/End: Original strand, 26534561 - 26534665
Alignment:
Q  134 gttgcagtttcattaattatgagtaaaattaattaagtttcgtatattagtgtttaannnnnnnnncttctttatatttggccccctcgtaaaaatagtg 233  Q
    |||||| ||||||||| |||||||||||||||||| ||||  |||||||||||||||          ||||||||||||||||||||| |||||| ||||    
T  26534561 gttgcaatttcattaaatatgagtaaaattaattaggttttatatattagtgtttaatttattctt-ttctttatatttggccccctcataaaaacagtg 26534659  T
Q  234 ctagct 239  Q
     |||||    
T  26534660 gtagct 26534665  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 42664238 - 42664141
Alignment:
Q  26 aaaaatattgataatctattttgtttagtgt---ttatggataaatttgacttctaaaaacaccttagagcacaacttttataaataactattgttag 120  Q
    ||||||| | ||||||||||| |||||||||   ||||  ||||||||||||| | |||||  | ||||| ||||||||||||||||| |||||||||    
T  42664238 aaaaatacttataatctatttagtttagtgtcaattataaataaatttgactttttaaaacttcatagagtacaacttttataaataattattgttag 42664141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 26534436 - 26534476
Alignment:
Q  12 agagatgatattataaaaatattgataatctattttgttta 52  Q
    ||||||| ||||||||||||||||||||||||||| |||||    
T  26534436 agagatggtattataaaaatattgataatctatttagttta 26534476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 96; Significance: 6e-47; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 11 - 248
Target Start/End: Original strand, 270295 - 270533
Alignment:
Q  11 cagagatgatattataaaaatattgataatctattttgtttagtgt---ttatggataaatttgacttctaaaaacaccttagagcacaacttttataaa 107  Q
    ||||||||||||||||||||||||||||||||| || |||||||||   ||||  ||||||||||||| ||||||| ||||||||| |||||||||||||    
T  270295 cagagatgatattataaaaatattgataatctacttagtttagtgtcaattataaataaatttgacttttaaaaactccttagagctcaacttttataaa 270394  T
Q  108 taactattgttagcgttta-nnnnnnngttgcagtttcattaattatgagtaaaattaattaagtttcgtatattagtgtttaannnnnnnnncttcttt 206  Q
    |||||||| ||||| ||||        ||||||||||||||||  ||||||||||||||||| |||||||||||||  ||||||         |||||||    
T  270395 taactatttttagcttttattttctttgttgcagtttcattaa--atgagtaaaattaattaggtttcgtatattaacgtttaa-tttttcttcttcttt 270491  T
Q  207 atatttggccccctcgtaaaaatagtgctagctacgtcgctg 248  Q
    ||||||||||||||||||||||||||| ||||| || |||||    
T  270492 atatttggccccctcgtaaaaatagtgttagcttcgccgctg 270533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 14 - 184
Target Start/End: Complemental strand, 14144987 - 14144810
Alignment:
Q  14 agatgatattataaaaatattgataatctattttgtttagtgt------ttatggataaatttgacttctaaaaacaccttagagcacaacttttataaa 107  Q
    ||||||||||||||||||||||||||||||||| |||||||||      ||||||||||||||||| ||||||||| |||||||||  ||||||||||||    
T  14144987 agatgatattataaaaatattgataatctatttagtttagtgtcaataattatggataaatttgacctctaaaaactccttagagcttaacttttataaa 14144888  T
Q  108 taactattgttagcgttta-nnnnnnngttgcagtttcattaattatgagtaaaattaattaagtttcgtatattagt 184  Q
    ||| |||||||||| ||||        |||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  14144887 taagtattgttagcttttattttctttgttgcagtttcattaaatatgagtaaaattaattaagtttcatatattagt 14144810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 11 - 239
Target Start/End: Complemental strand, 15471178 - 15470948
Alignment:
Q  11 cagagatgatattataaaaatattgataatctattttgtttagtgt---ttatggataaatttgacttctaaaaacaccttagagcacaacttttataaa 107  Q
    ||||||||||| || ||||||||||||||||||||| |||||||||   |||||||||||||||| |||||||||| | ||||||| |||||||||||||    
T  15471178 cagagatgataatacaaaaatattgataatctatttagtttagtgtcaattatggataaatttgaattctaaaaactcattagagctcaacttttataaa 15471079  T
Q  108 taactattgttagcgttt-annnnnnngttgcagtttcattaattatgagtaaaattaattaagtttcgtatattagtgtttaannnnnnnnncttcttt 206  Q
    |||||| ||||| | |||         |||| ||||||||||| ||||||||||||||||||| |||||||||||| | |||||         |||||||    
T  15471078 taactaatgttaacttttcttttctttgttgtagtttcattaaatatgagtaaaattaattaaatttcgtatattaatttttaa--ttttcttcttcttt 15470981  T
Q  207 atatttggccccctcgtaaaaatagtgctagct 239  Q
    |||||||||  |||||||||| |||||||||||    
T  15470980 atatttggcatcctcgtaaaattagtgctagct 15470948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 118
Target Start/End: Complemental strand, 35952028 - 35951919
Alignment:
Q  12 agagatgatattataaaaatattgataatctattttgtttagtgt---ttatggataaatttgacttctaaaaacaccttagagcacaacttttataaat 108  Q
    ||||||||||||  | ||||||||||||| ||||| |||||||||   |||||||||||||| | |||| | ||| |  || ||| ||||||||||||||    
T  35952028 agagatgatattgaacaaatattgataatatatttagtttagtgtcaattatggataaattttagttcttacaactctataaagctcaacttttataaat 35951929  T
Q  109 aactattgtt 118  Q
    ||||||||||    
T  35951928 aactattgtt 35951919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 11 - 248
Target Start/End: Complemental strand, 29686239 - 29685999
Alignment:
Q  11 cagagatgatattataaaaatattgataatctattttgtttagtgt---ttatggataaatttgacttctaaaaacaccttagagcacaacttttataaa 107  Q
    ||||||||||| ||||||||||||||||||||||||  ||||||||   ||||||||||| ||||||||||||||| | ||| ||  ||||||||||||     
T  29686239 cagagatgatactataaaaatattgataatctatttattttagtgtcaattatggataaaattgacttctaaaaactctttaaaggtcaacttttataag 29686140  T
Q  108 taactattgttagcgtttannnnnnngttgcagtttcattaattatgagtaaaattaattaagtttcgtatattagtgtttaannnnnnnnncttcttta 207  Q
    |||||||||||| | ||         |||| |||||||| || |||||||||||||||||||||||||||||||| |||||||         ||||||||    
T  29686139 taactattgttaactttattttctttgttgaagtttcatcaaatatgagtaaaattaattaagtttcgtatattaatgtttaattttttcttcttcttta 29686040  T
Q  208 tatttggccccctcgtaaaaatagtgctagctacgtcgctg 248  Q
    ||||||  || ||||||||||||||||||||| || |||||    
T  29686039 tatttgatccgctcgtaaaaatagtgctagcttcgccgctg 29685999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 121
Target Start/End: Complemental strand, 18061227 - 18061115
Alignment:
Q  12 agagatgatattataaaaatattgataatctattttgtttagtgt---ttatggataaatttgacttctaaaaacaccttagagcacaacttttataaat 108  Q
    ||||||| ||||| || |||||| ||||||||||| |||||||||   ||||| ||||||||||||||| ||||| |  || ||| ||| ||||||||||    
T  18061227 agagatgctattaaaataatattaataatctatttagtttagtgtccattatgaataaatttgacttcttaaaactctatatagctcaaattttataaat 18061128  T
Q  109 aactattgttagc 121  Q
    |||||||||||||    
T  18061127 aactattgttagc 18061115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 57 - 126
Target Start/End: Complemental strand, 21017273 - 21017204
Alignment:
Q  57 ttatggataaatttgacttctaaaaacaccttagagcacaacttttataaataactattgttagcgttta 126  Q
    ||||| ||||||||||||||| ||||| || || | | ||||||||||||||||||||||||||| ||||    
T  21017273 ttatgcataaatttgacttcttaaaactccatatatctcaacttttataaataactattgttagctttta 21017204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 19865946 - 19866039
Alignment:
Q  27 aaaatattgataatctattttgtttagtgt---ttatggataaatttgacttctaaaaacaccttagagcacaacttttataaataactattgttag 120  Q
    ||||||| |||||||||||| ||||||| |   |||| ||||||||||||||   |||||  | ||||||||||||||||||||||| |||||||||    
T  19865946 aaaatatagataatctatttagtttagtatcaattatagataaatttgactt---aaaacttcatagagcacaacttttataaataattattgttag 19866039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 19870847 - 19870940
Alignment:
Q  27 aaaatattgataatctattttgtttagtgt---ttatggataaatttgacttctaaaaacaccttagagcacaacttttataaataactattgttag 120  Q
    ||||||| |||||||||||| ||||||| |   |||| ||||||||||||||   |||||  | ||||||||||||||||||||||| |||||||||    
T  19870847 aaaatatagataatctatttagtttagtatcaattatagataaatttgactt---aaaacttcatagagcacaacttttataaataattattgttag 19870940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 19875748 - 19875841
Alignment:
Q  27 aaaatattgataatctattttgtttagtgt---ttatggataaatttgacttctaaaaacaccttagagcacaacttttataaataactattgttag 120  Q
    ||||||| |||||||||||| ||||||| |   |||| ||||||||||||||   |||||  | ||||||||||||||||||||||| |||||||||    
T  19875748 aaaatatagataatctatttagtttagtatcaattatagataaatttgactt---aaaacttcatagagcacaacttttataaataattattgttag 19875841  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 120
Target Start/End: Complemental strand, 33226718 - 33226620
Alignment:
Q  25 taaaaatattgataatctattttgtttagtgt---ttatggataaatttgacttctaaaaacaccttagagcacaacttttataaataactattgttag 120  Q
    |||||||| | ||||||||||| |||||||||   ||||  ||||||||||||| | |||||  | ||||| ||||||||||||||||| |||||||||    
T  33226718 taaaaatacttataatctatttagtttagtgtcaattataaataaatttgacttgttaaaacttcatagagtacaacttttataaataattattgttag 33226620  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 119
Target Start/End: Complemental strand, 45040157 - 45040067
Alignment:
Q  32 attgataatctattttgtttagtgt---ttatggataaatttgacttctaaaaacaccttagagcacaacttttataaataactattgtta 119  Q
    ||||||||||||||| ||||||| |   |||| |||||||||| ||||| ||||| || |||||| ||  ||||| |||||||||||||||    
T  45040157 attgataatctatttagtttagtatcaattatagataaatttgtcttcttaaaactccatagagctcatattttacaaataactattgtta 45040067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 239
Target Start/End: Original strand, 43559937 - 43559976
Alignment:
Q  200 cttctttatatttggccccctcgtaaaaatagtgctagct 239  Q
    |||||||||||||||| ||||||||||||| |||||||||    
T  43559937 cttctttatatttggctccctcgtaaaaattgtgctagct 43559976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 119
Target Start/End: Original strand, 43559685 - 43559795
Alignment:
Q  12 agagatgatattataaaaatattgataatctattttgtttagtgt---ttatggataaatttgacttctaaaaacaccttagagcacaacttttataaat 108  Q
    |||||| || ||| ||||||| | |||||||| || |||||||||   ||||  ||||||||||||| | |||||  | || || |||||||||||||||    
T  43559685 agagattattttaaaaaaatacttataatctacttagtttagtgtcaattataaataaatttgacttgttaaaacttcataaagtacaacttttataaat 43559784  T
Q  109 aactattgtta 119  Q
    || ||||||||    
T  43559785 aattattgtta 43559795  T

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Target: chr1 (Bit Score: 81; Significance: 5e-38; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 11 - 239
Target Start/End: Complemental strand, 31067185 - 31066954
Alignment:
Q  11 cagagatgatattataaaaatattgataatctattttgtttagtgt---ttatggataaatttgacttctaaaaacaccttagagcacaacttttataaa 107  Q
    ||||||| |||||||||||| |||||||||| ||||  ||||||||   |||||||||  |||||||||||||||| ||||||||| ||||||||| |||    
T  31067185 cagagataatattataaaaacattgataatcaatttaatttagtgtcaattatggata--tttgacttctaaaaactccttagagctcaacttttaaaaa 31067088  T
Q  108 taactattgttagcgttta-nnnnnnngttgcagtttcattaattatgagtaaaattaattaagtttcgtatattagtgtttaa-nnnnnnnnncttctt 205  Q
    ||| |||||||||  ||||        || ||||||||||||| |||||||||||||||||||||||| |||||||||||||||          ||||||    
T  31067087 taattattgttagtttttattttctttgtcgcagtttcattaaatatgagtaaaattaattaagtttcatatattagtgtttaatttttttcttcttctt 31066988  T
Q  206 tatatttggccccctcgtaaaaatagtgctagct 239  Q
    ||||||||||||||| |||||||||||| |||||    
T  31066987 tatatttggcccccttgtaaaaatagtgttagct 31066954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 27 - 115
Target Start/End: Complemental strand, 44508305 - 44508214
Alignment:
Q  27 aaaatattgataatctattttgtttagtgt---ttatggataaatttgacttctaaaaacaccttagagcacaacttttataaataactatt 115  Q
    ||||||||||||||||||||  ||||||||   |||| |||||||||||||||| |||||    |||||| |||||||||||||||| ||||    
T  44508305 aaaatattgataatctatttaatttagtgtcaattatagataaatttgacttcttaaaactttatagagctcaacttttataaataattatt 44508214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 239
Target Start/End: Original strand, 15962583 - 15962622
Alignment:
Q  200 cttctttatatttggccccctcgtaaaaatagtgctagct 239  Q
    |||||||||||||||||||||||||||||| |||| ||||    
T  15962583 cttctttatatttggccccctcgtaaaaattgtgcgagct 15962622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 248
Target Start/End: Original strand, 7093804 - 7093852
Alignment:
Q  200 cttctttatatttggccccctcgtaaaaatagtgctagctacgtcgctg 248  Q
    |||||||||||||| |||||||||||||||  |||||||| || |||||    
T  7093804 cttctttatatttgaccccctcgtaaaaattatgctagcttcgccgctg 7093852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 8e-31; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 14 - 121
Target Start/End: Complemental strand, 46091907 - 46091797
Alignment:
Q  14 agatgatattataaaaatattgataatctattttgtttagtgtt---tatggataaatttgacttctaaaaacaccttagagcacaacttttataaataa 110  Q
    |||| ||||||||||||||||||||||| |||| ||||||||||   ||||||||||||||||||||||| || ||||||||| |||| |||||||||||    
T  46091907 agataatattataaaaatattgataatccatttagtttagtgttaattatggataaatttgacttctaaatactccttagagctcaacatttataaataa 46091808  T
Q  111 ctattgttagc 121  Q
    |||||||||||    
T  46091807 ctattgttagc 46091797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 12 - 120
Target Start/End: Original strand, 28521516 - 28521627
Alignment:
Q  12 agagatgatattataaaaatattgataatctattttgtttagtgt---ttatggataaatttgacttctaaaaacaccttagagcacaacttttataaat 108  Q
    |||||| ||||||||| |||||||||||||||||| ||||||| |   ||||| ||||||||||||||| ||||   | |||||| ||| |||| || ||    
T  28521516 agagataatattataataatattgataatctatttagtttagtatcaattatgaataaatttgacttcttaaaatttcatagagctcaatttttgtagat 28521615  T
Q  109 aactattgttag 120  Q
    ||||||||||||    
T  28521616 aactattgttag 28521627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 33087961 - 33087858
Alignment:
Q  17 tgatattataaaaatattgataatctattttgtttagtgt---ttatggataaatttgacttctaaaaacaccttagagcacaacttttataaataacta 113  Q
    ||||||||  |||||||||||||||||||| |||||||||   |||| |||||| ||||||||| |||||  | || ||| |||||||||||||||| ||    
T  33087961 tgatattaataaaatattgataatctatttagtttagtgtcaattatagataaa-ttgacttcttaaaacttcataaagctcaacttttataaataatta 33087863  T
Q  114 ttgtt 118  Q
    |||||    
T  33087862 ttgtt 33087858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 126
Target Start/End: Complemental strand, 28050831 - 28050714
Alignment:
Q  12 agagatgatattataaaaatattgataatctattttgtttagtgt---ttatggataaatttgacttctaaaaacaccttagagcacaacttttataaat 108  Q
    |||||||||| || |||||||| |||||||||||| ||||| |||   |||| ||||||||| | |||| ||| |  | |||| | ||||||||||| ||    
T  28050831 agagatgataataaaaaaatatggataatctatttagtttaatgtctattatagataaatttaatttcttaaatcttcatagaactcaacttttatagat 28050732  T
Q  109 aactattgttagcgttta 126  Q
    |||||||| |||| ||||    
T  28050731 aactattggtagctttta 28050714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 126
Target Start/End: Complemental strand, 28146890 - 28146771
Alignment:
Q  12 agagatgatattataaaaatattgataatctattttgtttagtgt---ttatggataaatttgacttctaaaaacacc--ttagagcacaacttttataa 106  Q
    ||||||| | ||| ||||||||||||| |||| || |||||||||   |||||||||| |||||||||| |||||  |   |||| | ||| |||||||     
T  28146890 agagatgctcttaaaaaaatattgatattctaattagtttagtgtcaattatggataactttgacttctgaaaacttcatatagaactcaaattttatag 28146791  T
Q  107 ataactattgttagcgttta 126  Q
    ||||||||||||||| ||||    
T  28146790 ataactattgttagctttta 28146771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 120
Target Start/End: Complemental strand, 45483789 - 45483757
Alignment:
Q  88 tagagcacaacttttataaataactattgttag 120  Q
    ||||||||||||||||||||||| |||||||||    
T  45483789 tagagcacaacttttataaataattattgttag 45483757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 11 - 119
Target Start/End: Complemental strand, 29857503 - 29857392
Alignment:
Q  11 cagagatgatattataaaaatattgataatctattttgtttagtgtt---tatggataaatttgacttctaaaaacaccttagagcacaacttttataaa 107  Q
    ||||||||||  |||||||||||||||||||||||| ||||||||||   |||||||||| ||||||||||||||| | ||| ||| ||||||||||||     
T  29857503 cagagatgattctataaaaatattgataatctatttagtttagtgttaattatggataaaattgacttctaaaaactctttaaagctcaacttttataag 29857404  T
Q  108 taactattgtta 119  Q
    ||||||||||||    
T  29857403 taactattgtta 29857392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 62 - 120
Target Start/End: Complemental strand, 20447814 - 20447756
Alignment:
Q  62 gataaatttgacttctaaaaacaccttagagcacaacttttataaataactattgttag 120  Q
    |||||||||||||||| | |||| | |||||| |||||||||||||||| |||||||||    
T  20447814 gataaatttgacttcttacaacatcatagagctcaacttttataaataattattgttag 20447756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 55250518 - 55250614
Alignment:
Q  27 aaaatattgataatctattttgtttagtgt---ttatggataaatttgacttctaaaaacaccttagagcacaacttttataaataactattgttag 120  Q
    |||||||||||||||||||| |||||||||   |||| |||||||||||||||| ||||     || ||| ||||||| |||||||| |||||||||    
T  55250518 aaaatattgataatctatttagtttagtgtcaattatagataaatttgacttcttaaaattttatatagctcaactttaataaataattattgttag 55250614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 248
Target Start/End: Complemental strand, 29857322 - 29857274
Alignment:
Q  200 cttctttatatttggccccctcgtaaaaatagtgctagctacgtcgctg 248  Q
    ||||||||||||| ||||| |||||||||||||||||||| || |||||    
T  29857322 cttctttatatttagccccttcgtaaaaatagtgctagcttcgccgctg 29857274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 126
Target Start/End: Complemental strand, 1101166 - 1101069
Alignment:
Q  32 attgataatctattttgtttagtgtt---tatggataaatttgacttctaaaaacaccttagagcacaacttttataaataactattgttagcgttta 126  Q
    ||||||||||||||| |||||||||    ||| |||||||||| ||||| ||||| |  |||||| || |||||| |||||||||||| |||| ||||    
T  1101166 attgataatctatttagtttagtgtcaactatagataaatttgtcttcttaaaactcaatagagctcatcttttacaaataactattggtagctttta 1101069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 107
Target Start/End: Original strand, 46964062 - 46964112
Alignment:
Q  57 ttatggataaatttgacttctaaaaacaccttagagcacaacttttataaa 107  Q
    ||||||||||||||||||||| ||||| || | |||| |||||||||||||    
T  46964062 ttatggataaatttgacttcttaaaactccatcgagctcaacttttataaa 46964112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 47668786 - 47668748
Alignment:
Q  200 cttctttatatttggccccctcgtaaaaatagtgctagc 238  Q
    ||||||||||||| |||||||||||||||| ||||||||    
T  47668786 cttctttatattttgccccctcgtaaaaattgtgctagc 47668748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 236
Target Start/End: Complemental strand, 20447647 - 20447611
Alignment:
Q  200 cttctttatatttggccccctcgtaaaaatagtgcta 236  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  20447647 cttctttatatttggccccctcataaaaattgtgcta 20447611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 110
Target Start/End: Complemental strand, 47668992 - 47668906
Alignment:
Q  27 aaaatattgataatctattttgtttagtgt---ttatggataaatttgacttctaaaaacaccttagagcacaacttttataaataa 110  Q
    ||||||||||||||||||||  ||||||||   |||| ||||||||||| |||| |||||    |||||  ||||||||||||||||    
T  47668992 aaaatattgataatctatttaatttagtgtcaattatagataaatttgatttcttaaaactttatagagttcaacttttataaataa 47668906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 110
Target Start/End: Original strand, 4017104 - 4017205
Alignment:
Q  12 agagatgatattataaaaatattgataatctattttgtttagtgtt---tatggataaatttgacttctaaaaacaccttagagcacaacttttataaat 108  Q
    ||||||||||||| ||| | |||  |||||||||| ||||||||||   |||| ||||||||||||||| ||||| |  |||| | ||||||||||||||    
T  4017104 agagatgatattaaaaatacatttgtaatctatttagtttagtgttaattatgaataaatttgacttctgaaaactcgatagaactcaacttttataaat 4017203  T
Q  109 aa 110  Q
    ||    
T  4017204 aa 4017205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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