View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11346_low_1 (Length: 790)
Name: NF11346_low_1
Description: NF11346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11346_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 714; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 714; E-Value: 0
Query Start/End: Original strand, 18 - 779
Target Start/End: Original strand, 47584714 - 47585474
Alignment:
| Q |
18 |
atatgtgagtcaaagatttcttagacttctcttgaatagagtttttgaaagaattgttttcttaattgacagatgaatattgtaggcttggacaaaatgg |
117 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
47584714 |
atatgtgagtcaaaaatttcttagacttctcttgaatagagtttttgaaagaattgttttcttaattgacaaatgaatattgtaggcttggacaaaatgg |
47584813 |
T |
|
| Q |
118 |
gcagagcaaacaccacttgaactaatggatcctagcatggaaggaacttattcccatgaagaagtcatcaaatacatccacattggtttgttatgtgttc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47584814 |
gcagagcaaacaccacttgaactaatggatcctagcatggaaggaacttattcacatgaagaagtcatcaaatacatccacattggtttgttatgtgttc |
47584913 |
T |
|
| Q |
218 |
aagaaaatccagatgacagacctacaatggcaacaatagcattctacctcaacagcccttcaatcaacctgccatcccctcttgaaccaccatattttca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47584914 |
aagaaaatccagatgacagacctacaatggcaacaatagcattctacctcaacagcccttcaatcaacctgccatcccctcttgaaccaccatattttca |
47585013 |
T |
|
| Q |
318 |
gcgtagaggaaatgaagaaaacgcgacctccaacaaggaattggacaatattggtaattcaaccaacggaatcactgtcagtcaattctttcctcgttaa |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47585014 |
gcgtagaggaaatgaagaaaacgcgacctccaacaaggaattggacaatatcggtaattcaaccaacggaatcactgtcagtcaattctttcctcgttaa |
47585113 |
T |
|
| Q |
418 |
gacatgggtgaaaacagttttcactttatttgttgttacataaatactatagaccacaaaattgaaccatgtgaaatacaattggaataaaagtataaca |
517 |
Q |
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| T |
47585114 |
gacatgggtgaaaacagttttcactttatttgttgttacataaatactatagaccacaaaattgaaccatgtgaaatacaattggaataaaagtataaca |
47585213 |
T |
|
| Q |
518 |
aataaccagagttacatttatatatttgaataaaagtaattgacaattctattcctggaatctatggaaatgtaccatgtattaagaactttggaaatag |
617 |
Q |
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| T |
47585214 |
tataaccagagttacatttatatattggaataaaagtaattgacaattctattcctggaatctatggaaatgtaccatgaattaagaactttggaaatag |
47585313 |
T |
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| Q |
618 |
aaaaagaaaaggcattaactcattaagcaaaatctgtgtgcctattttacagagacattttatcaaacagttgtggggcgtaaaagtatgatcagcaaaa |
717 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
47585314 |
aaaaagaaaaggcattaactcattaagcaaaatctgtgtgcctattttacagagatattttatcaaacacttgtgggacgtaaaagtatgatcagcaaaa |
47585413 |
T |
|
| Q |
718 |
ccaaacaagacaattgctgtaatcattagagttgattgagaaattaccctaggtgcatctct |
779 |
Q |
| |
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| T |
47585414 |
ccaaacaagacaattgctgtaatcattagagttgattgagaaatta-cctaggtgcatctct |
47585474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 94 - 335
Target Start/End: Original strand, 47575102 - 47575343
Alignment:
| Q |
94 |
atattgtaggcttggacaaaatgggcagagcaaacaccacttgaactaatggatcctagcatggaaggaacttattcccatgaagaagtcatcaaataca |
193 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||| | |||||||||||||||| || |||||||||||||||||||||||||||||||| |||| |
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| T |
47575102 |
atattgtaggcttggacaaaatggccagagcaaacaccaatggaactaatggatcctaatatagaaggaacttattcccatgaagaagtcatcaactaca |
47575201 |
T |
|
| Q |
194 |
tccacattggtttgttatgtgttcaagaaaatccagatgacagacctacaatggcaacaatagcattctacctcaacagcccttcaatcaacctgccatc |
293 |
Q |
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||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||| | ||||||||||||||||| |||||| |||| ||||||| |
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| T |
47575202 |
tccacattggtttgttatgtgttcaggaaaatccagaagacaggcctacaatggcaacagttgcattctacctcaacagttcttcaaccaacttgccatc |
47575301 |
T |
|
| Q |
294 |
ccctcttgaaccaccatattttcagcgtagaggaaatgaaga |
335 |
Q |
| |
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| T |
47575302 |
ccctcttgaaccaccatattttaagcgtaatggaactgaaga |
47575343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 580 - 743
Target Start/End: Original strand, 47575587 - 47575749
Alignment:
| Q |
580 |
tatggaaatgtaccatgtattaagaactttggaaatagaaaaagaaaaggcattaactcattaagcaaaatctgtgtgcctattttacagagacatttta |
679 |
Q |
| |
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|||||||||||||||| | | ||||||||| |||||||||||| ||||||||||| |||||||||||||| ||||||| |||||| ||||||| |||| |
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| T |
47575587 |
tatggaaatgtaccatacacttagaactttgtaaatagaaaaagtaaaggcattaattcattaagcaaaatgtgtgtgcatatttttgagagacaattta |
47575686 |
T |
|
| Q |
680 |
tcaaacagttgtggggcgtaaaagtatgatcagcaaaaccaaacaagacaattgctgtaatcat |
743 |
Q |
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|||||||||||| | | || |||||||||||||||||| ||||||||| ||||| ||| ||||| |
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| T |
47575687 |
tcaaacagttgtagtgtgt-aaagtatgatcagcaaaatcaaacaagagaattgttgtgatcat |
47575749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 47593976 - 47594028
Alignment:
| Q |
199 |
attggtttgttatgtgttcaagaaaatccagatgacagacctacaatggcaac |
251 |
Q |
| |
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|||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
47593976 |
attggtttgttatgtgttcaagaaaatccaaatgtaagacctacaatggcaac |
47594028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 252
Target Start/End: Original strand, 47619840 - 47619914
Alignment:
| Q |
178 |
gaagtcatcaaatacatccacattggtttgttatgtgttcaagaaaatccagatgacagacctacaatggcaaca |
252 |
Q |
| |
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||||| || |||| ||| || |||||||| |||||||| |||||||||||| ||| |||||||||||||||||| |
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| T |
47619840 |
gaagttataaaatgcattcaaattggtttattatgtgtccaagaaaatccaaatgctagacctacaatggcaaca |
47619914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 252
Target Start/End: Original strand, 47637110 - 47637170
Alignment:
| Q |
192 |
catccacattggtttgttatgtgttcaagaaaatccagatgacagacctacaatggcaaca |
252 |
Q |
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|||||| |||||||| ||||||| |||||| ||||||| || |||||||||||||||||| |
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| T |
47637110 |
catccatattggtttactatgtgtccaagaagatccagaagatagacctacaatggcaaca |
47637170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 200 - 249
Target Start/End: Complemental strand, 469479 - 469430
Alignment:
| Q |
200 |
ttggtttgttatgtgttcaagaaaatccagatgacagacctacaatggca |
249 |
Q |
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| T |
469479 |
ttggtttattatgtgttcaagaaaatcctgatgatagacctacaatggca |
469430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 247
Target Start/End: Complemental strand, 453557 - 453488
Alignment:
| Q |
178 |
gaagtcatcaaatacatccacattggtttgttatgtgttcaagaaaatccagatgacagacctacaatgg |
247 |
Q |
| |
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| T |
453557 |
gaagtcataagatgcattcaaattggtttattatgtgtgcaacaaaatccagatgatagaccaacaatgg |
453488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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