View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11346_low_2 (Length: 733)

Name: NF11346_low_2
Description: NF11346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11346_low_2
NF11346_low_2
[»] chr5 (5 HSPs)
chr5 (9-715)||(7637001-7637707)
chr5 (280-372)||(10372929-10373021)
chr5 (509-581)||(7637234-7637305)
chr5 (174-237)||(25548443-25548505)
chr5 (170-219)||(11648003-11648052)
[»] chr1 (6 HSPs)
chr1 (280-409)||(18325314-18325443)
chr1 (269-409)||(12655265-12655404)
chr1 (179-237)||(32088671-32088728)
chr1 (170-223)||(26439789-26439842)
chr1 (341-407)||(4347034-4347100)
chr1 (174-251)||(2099770-2099846)
[»] chr6 (7 HSPs)
chr6 (294-379)||(10874235-10874320)
chr6 (294-372)||(34620931-34621009)
chr6 (294-372)||(34748368-34748446)
chr6 (323-413)||(1499974-1500064)
chr6 (583-617)||(10054955-10054989)
chr6 (174-219)||(25195479-25195524)
chr6 (335-372)||(26492617-26492654)
[»] chr2 (4 HSPs)
chr2 (280-372)||(44439285-44439377)
chr2 (174-222)||(33502961-33503009)
chr2 (174-212)||(8481396-8481434)
chr2 (174-223)||(9943348-9943397)
[»] chr4 (7 HSPs)
chr4 (275-386)||(22683890-22684001)
chr4 (283-386)||(34719102-34719205)
chr4 (198-371)||(25318996-25319170)
chr4 (324-372)||(17898090-17898138)
chr4 (174-219)||(2635088-2635133)
chr4 (174-213)||(26617748-26617787)
chr4 (170-213)||(31013854-31013897)
[»] chr3 (6 HSPs)
chr3 (324-366)||(40339301-40339343)
chr3 (324-413)||(30958111-30958201)
chr3 (324-413)||(30973923-30974013)
chr3 (324-366)||(44489384-44489426)
chr3 (176-213)||(836129-836166)
chr3 (174-223)||(52925722-52925771)
[»] chr8 (2 HSPs)
chr8 (296-372)||(4950530-4950606)
chr8 (270-371)||(11791696-11791797)
[»] scaffold0361 (1 HSPs)
scaffold0361 (294-372)||(14076-14154)
[»] chr7 (5 HSPs)
chr7 (280-371)||(1024688-1024780)
chr7 (170-221)||(12306898-12306949)
chr7 (171-222)||(41841085-41841136)
chr7 (334-372)||(117850-117888)
chr7 (294-363)||(40795960-40796029)


Alignment Details
Target: chr5 (Bit Score: 687; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 687; E-Value: 0
Query Start/End: Original strand, 9 - 715
Target Start/End: Complemental strand, 7637707 - 7637001
Alignment:
Q  9 cagagagaaaaattgaaaaacaatttgacggctcaactagataatttatctctatacaatcatactagctagtaatatcacatcatcacagccaaaatac 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7637707 cagagagaaaaattgaaaaacaatttgacggctcaactagataatttatctctatacaatcatactagctagtaatatcacatcatcacagccaaaatac 7637608  T
Q  109 ctaaaagcaatcaaaagaatacataacaaacatgatattgcaaaagtaccaattcagttatccataattgattctggatgtgtaaaatagattttgacat 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  7637607 ctaaaagcaatcaaaagaatacataacaaacatgatattgcaaaagtaccaattcagttatccataattgattctggatgtgtaaaattgattttgacat 7637508  T
Q  209 gtttgattgctctcaaagtaaaattgattgtctccataattgactttagcttgaaattacaatttatagcatttgagtctaaacatgatttttacactga 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7637507 gtttgattgctctcaaagtaaaattgattgtctccataattgactttagcttgaaattacaatttatagcatttgagtctaaacatgatttttacactga 7637408  T
Q  309 agtttactattcatctcactttcacctaaatatatccaaacataaaccactttacatttaactcgcatttaagcaaaaacaactttgcaaaatcaattca 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7637407 agtttactattcatctcactttcacctaaatatatccaaacataaaccactttacatttaactcgcatttaagcaaaaacaactttgcaaaatcaattca 7637308  T
Q  409 ttcaagacttaattattcaaatgatcctgcaaataggggtcactagaattttagtccctgtaactcaaaattaaaagtgattagaaattgcagtgtcaaa 508  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7637307 ttcaagacttaattattcaaatgatcctgcaaataggggtcccttgaattttagtccctgtaactcaaaattaaaagtgattagaaattgcagtgtcaaa 7637208  T
Q  509 ttaatttggaattacagggactaaaattcaagctacccctatttacagagagcatttgcataattaagccttggttcaaaatcatcttttgtcaccgcaa 608  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  7637207 ttaatttggaattacagggactaaaattcaagctacccctatttacagagagcatttgcataattgagccttggttcaaaatcatcttttgtcaccgcaa 7637108  T
Q  609 aaccaaacatgcacagaatttgagttttcctatacacatgcataagaaacaaaccaaaaaactgttaaattctaatatcttgtatacctgagctgcaaca 708  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7637107 aaccaaacatgcacagaatttgagttttcctatacacatgcataagagacaaaccaaaaaactgttaaattctaatatcttgtatacctgagctgcaaca 7637008  T
Q  709 gtgtgtg 715  Q
    |||||||    
T  7637007 gtgtgtg 7637001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 280 - 372
Target Start/End: Original strand, 10372929 - 10373021
Alignment:
Q  280 tttgagtctaaacatgatttttacactgaagtttactattcatctcactttcacctaaatatatccaaacataaaccactttacatttaactc 372  Q
    ||||||||||||| ||||||||| | |||| |||| | |||| || ||||||   ||||| ||||||||||||||||| |||||||| |||||    
T  10372929 tttgagtctaaacgtgatttttataatgaaatttattgttcaacttactttcgtgtaaatgtatccaaacataaaccagtttacattcaactc 10373021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 509 - 581
Target Start/End: Original strand, 7637234 - 7637305
Alignment:
Q  509 ttaatttggaattacagggactaaaattcaagctacccctatttacagagagcatttgcataattaagccttg 581  Q
    ||||||| || |||||||||||||||||||||  |||||||||| ||| || |||||| ||||||||| ||||    
T  7637234 ttaattttgagttacagggactaaaattcaagggacccctatttgcag-gatcatttgaataattaagtcttg 7637305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 237
Target Start/End: Original strand, 25548443 - 25548505
Alignment:
Q  174 aattgattctggatgtgtaaaatagattttgacatgtttgattgctctcaaagtaaaattgatt 237  Q
    |||||||| |||||||||| ||| |||| ||||||||||||||||| |  ||||||||||||||    
T  25548443 aattgattgtggatgtgtagaattgattatgacatgtttgattgct-tttaagtaaaattgatt 25548505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 219
Target Start/End: Original strand, 11648003 - 11648052
Alignment:
Q  170 ccataattgattctggatgtgtaaaatagattttgacatgtttgattgct 219  Q
    |||||||||||| |||  ||||| ||| ||||||||||||||||||||||    
T  11648003 ccataattgattttggtggtgtataattgattttgacatgtttgattgct 11648052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 3e-19; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 280 - 409
Target Start/End: Complemental strand, 18325443 - 18325314
Alignment:
Q  280 tttgagtctaaacatgatttttacactgaagtttactattcatctcactttcacctaaatatatccaaacataaaccactttacatttaactcgcattta 379  Q
    ||||||||||||  ||||||||||| | || |||||| |||||||||||||||| ||||| |||| ||||| |||||| |||||||| ||||| | ||||    
T  18325443 tttgagtctaaatgtgatttttacattaaaatttactgttcatctcactttcacataaatttatctaaacagaaaccattttacattcaactcactttta 18325344  T
Q  380 agcaaaaacaactttgcaaaatcaattcat 409  Q
     | |||| ||| ||| ||||| ||||||||    
T  18325343 tgtaaaatcaattttacaaaaccaattcat 18325314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 269 - 409
Target Start/End: Original strand, 12655265 - 12655404
Alignment:
Q  269 aatttatagcatttgagtctaaacatgatttttacactgaagtttactattcatctcactttcacctaaatatatccaaacataaaccactttacattta 368  Q
    ||||| ||||||||||||||||| ||||| ||||| || ||||||| | |||| |||||||| || | ||| |||| ||||||| |||| | |||||| |    
T  12655265 aatttgtagcatttgagtctaaatatgatctttactctaaagtttattgttcaactcacttt-acatgaatttatctaaacatagaccattctacattca 12655363  T
Q  369 actcgcatttaagcaaaaacaactttgcaaaatcaattcat 409  Q
    |||||| |||||| |||| ||| ||  || |||||||||||    
T  12655364 actcgcttttaagtaaaatcaatttcacataatcaattcat 12655404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 237
Target Start/End: Complemental strand, 32088728 - 32088671
Alignment:
Q  179 attctggatgtgtaaaatagattttgacatgtttgattgctctcaaagtaaaattgatt 237  Q
    |||||||| ||||||||| |||||||||||||||| |||||||| ||||| ||||||||    
T  32088728 attctggacgtgtaaaattgattttgacatgtttggttgctctc-aagtagaattgatt 32088671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 26439789 - 26439842
Alignment:
Q  170 ccataattgattctggatgtgtaaaatagattttgacatgtttgattgctctca 223  Q
    |||||| ||||| |||  ||||||||| ||||||||||||||||||||||||||    
T  26439789 ccataaatgattatggcggtgtaaaattgattttgacatgtttgattgctctca 26439842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 341 - 407
Target Start/End: Original strand, 4347034 - 4347100
Alignment:
Q  341 tatccaaacataaaccactttacatttaactcgcatttaagcaaaaacaactttgcaaaatcaattc 407  Q
    |||||||||||||| ||||||||||| ||||| | ||||| ||||| ||| | | ||||||||||||    
T  4347034 tatccaaacataaatcactttacattcaactcacttttaaccaaaatcaattctacaaaatcaattc 4347100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 251
Target Start/End: Complemental strand, 2099846 - 2099770
Alignment:
Q  174 aattgattctggatgtgtaaaatagattttgacatgtttgattgctctcaaagtaaaattgattgtctccataattga 251  Q
    ||||||||||||| ||||| ||| |||| |||| |||||||||| | ||  |||| ||||||||||||||| ||||||    
T  2099846 aattgattctggaggtgtagaattgattatgacttgtttgattgatgtc-gagtagaattgattgtctccagaattga 2099770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 294 - 379
Target Start/End: Complemental strand, 10874320 - 10874235
Alignment:
Q  294 tgatttttacactgaagtttactattcatctcactttcacctaaatatatccaaacataaaccactttacatttaactcgcattta 379  Q
    ||||||| ||||| ||  ||| |||||  |||||||| ||||||||||||||||||||||||||||| ||||| ||||| ||||||    
T  10874320 tgattttcacactcaaaattattattcgactcacttttacctaaatatatccaaacataaaccacttcacattcaactcacattta 10874235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 294 - 372
Target Start/End: Original strand, 34620931 - 34621009
Alignment:
Q  294 tgatttttacactgaagtttactattcatctcactttcacctaaatatatccaaacataaaccactttacatttaactc 372  Q
    ||||||||||||| || |||| | |||| |||||||| || ||||| |||||||||||||| |||||||| || |||||    
T  34620931 tgatttttacactaaaatttatttttcaactcacttttacataaatgtatccaaacataaatcactttaccttcaactc 34621009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 294 - 372
Target Start/End: Original strand, 34748368 - 34748446
Alignment:
Q  294 tgatttttacactgaagtttactattcatctcactttcacctaaatatatccaaacataaaccactttacatttaactc 372  Q
    ||||||||||||| || |||| | |||| |||||||| || ||||| |||||||||||||| |||||||| || |||||    
T  34748368 tgatttttacactaaaatttatttttcaactcacttttacataaatgtatccaaacataaatcactttaccttcaactc 34748446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 323 - 413
Target Start/End: Original strand, 1499974 - 1500064
Alignment:
Q  323 ctcactttcacctaaatatatccaaacataaaccactttacatttaactcgcatttaagcaaaaacaactttgcaaaatcaattcattcaa 413  Q
    |||||||| || ||||| ||| |||||||||| || |||||| | ||||||| ||||  ||||| ||| ||| ||||||||||||| ||||    
T  1499974 ctcacttttacataaatgtattcaaacataaatcaatttacactcaactcgcttttagccaaaatcaattttacaaaatcaattcagtcaa 1500064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 583 - 617
Target Start/End: Complemental strand, 10054989 - 10054955
Alignment:
Q  583 ttcaaaatcatcttttgtcaccgcaaaaccaaaca 617  Q
    |||||||||| ||||||||||||||||||||||||    
T  10054989 ttcaaaatcaacttttgtcaccgcaaaaccaaaca 10054955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 219
Target Start/End: Complemental strand, 25195524 - 25195479
Alignment:
Q  174 aattgattctggatgtgtaaaatagattttgacatgtttgattgct 219  Q
    ||||||||||||||||||| ||| |||| ||||||||||| |||||    
T  25195524 aattgattctggatgtgtataattgattctgacatgtttggttgct 25195479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 335 - 372
Target Start/End: Original strand, 26492617 - 26492654
Alignment:
Q  335 taaatatatccaaacataaaccactttacatttaactc 372  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  26492617 taaatatatccaaacataaaacactttacattcaactc 26492654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 280 - 372
Target Start/End: Original strand, 44439285 - 44439377
Alignment:
Q  280 tttgagtctaaacatgatttttacactgaagtttactattcatctcactttcacctaaatatatccaaacataaaccactttacatttaactc 372  Q
    ||||| ||||||  ||||||| ||||| || |||| | |||| |||||||| || |||| ||||||||||||||| |||||||||||||||||    
T  44439285 tttgattctaaaattgattttaacactcaaatttattgttcaactcacttttacataaacatatccaaacataaatcactttacatttaactc 44439377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 33503009 - 33502961
Alignment:
Q  174 aattgattctggatgtgtaaaatagattttgacatgtttgattgctctc 222  Q
    ||||||||||| | ||||||||| |||||||||||||||| ||||||||    
T  33503009 aattgattctgaaggtgtaaaattgattttgacatgtttggttgctctc 33502961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 174 - 212
Target Start/End: Complemental strand, 8481434 - 8481396
Alignment:
Q  174 aattgattctggatgtgtaaaatagattttgacatgttt 212  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  8481434 aattgattctggatgtgtataatggattttgacatgttt 8481396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 9943348 - 9943397
Alignment:
Q  174 aattgattctggatgtgtaaaatagattttgacatgtttgattgctctca 223  Q
    ||||||||||| | ||||||||| |||||| ||||||||| |||||||||    
T  9943348 aattgattctgaaggtgtaaaattgattttaacatgtttggttgctctca 9943397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 275 - 386
Target Start/End: Original strand, 22683890 - 22684001
Alignment:
Q  275 tagcatttgagtctaaacatgatttttacactgaagtttactattcatctcactttcacctaaatatatccaaacataaaccactttacatttaactcgc 374  Q
    |||| ||||||||||||| ||||||||||| |||| |||| | |||| ||| |||| || ||||| | ||||||||||||||| ||||| || ||||| |    
T  22683890 tagcttttgagtctaaacgtgatttttacattgaaatttattgttcaactcgcttttacataaatgtgtccaaacataaaccattttactttcaactcac 22683989  T
Q  375 atttaagcaaaa 386  Q
     |||||| ||||    
T  22683990 ttttaagtaaaa 22684001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 283 - 386
Target Start/End: Original strand, 34719102 - 34719205
Alignment:
Q  283 gagtctaaacatgatttttacactgaagtttactattcatctcactttcacctaaatatatccaaacataaaccactttacatttaactcgcatttaagc 382  Q
    ||||| |||||||||||||||| |||| |||| | |||| ||| ||||||   |||| ||||||||||||||| | |||||||||||||||  ||||||     
T  34719102 gagtccaaacatgatttttacattgaaatttatttttcaactcgctttcatgcaaatgtatccaaacataaacaattttacatttaactcggttttaagt 34719201  T
Q  383 aaaa 386  Q
    ||||    
T  34719202 aaaa 34719205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 198 - 371
Target Start/End: Original strand, 25318996 - 25319170
Alignment:
Q  198 gattttgacatgtttgattgctctcaaagtaaaattga--ttgtctccataattgactttagcttgaaattacaatttatagcatttgagtctaaacatg 295  Q
    |||||||||||||||| ||||||||  |||| ||||||  ||||||||| |||||| | || ||||||  ||  |||| |||| ||||||||||||  ||    
T  25318996 gattttgacatgtttggttgctctc-gagtagaattgattttgtctccagaattgattctaacttgaaggtaggatttgtagc-tttgagtctaaatgtg 25319093  T
Q  296 a-tttttacactgaagtttactattcatctcactttcacctaaatatatccaaacataaaccactttacatttaact 371  Q
    | |||||| |||||| |||| | |||| |||||||| || ||||| |||| |||||||||  |||||||||| ||||    
T  25319094 attttttatactgaaatttattgttcaactcacttttacgtaaatgtatcgaaacataaaaaactttacattcaact 25319170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 324 - 372
Target Start/End: Complemental strand, 17898138 - 17898090
Alignment:
Q  324 tcactttcacctaaatatatccaaacataaaccactttacatttaactc 372  Q
    ||||||| ||||||||||||||||||||||| ||||||||||| |||||    
T  17898138 tcacttttacctaaatatatccaaacataaatcactttacattcaactc 17898090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 219
Target Start/End: Original strand, 2635088 - 2635133
Alignment:
Q  174 aattgattctggatgtgtaaaatagattttgacatgtttgattgct 219  Q
    |||||||||| || ||||||||| ||||||||||||||||||||||    
T  2635088 aattgattctagaagtgtaaaattgattttgacatgtttgattgct 2635133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 213
Target Start/End: Complemental strand, 26617787 - 26617748
Alignment:
Q  174 aattgattctggatgtgtaaaatagattttgacatgtttg 213  Q
    |||||||||| |||||||||||| ||||||||||||||||    
T  26617787 aattgattctagatgtgtaaaattgattttgacatgtttg 26617748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 213
Target Start/End: Complemental strand, 31013897 - 31013854
Alignment:
Q  170 ccataattgattctggatgtgtaaaatagattttgacatgtttg 213  Q
    |||||||||||| | |||||||||||| ||||||||||||||||    
T  31013897 ccataattgattttagatgtgtaaaattgattttgacatgtttg 31013854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 324 - 366
Target Start/End: Original strand, 40339301 - 40339343
Alignment:
Q  324 tcactttcacctaaatatatccaaacataaaccactttacatt 366  Q
    ||||||| |||||||||||||||||||||||||||||||||||    
T  40339301 tcacttttacctaaatatatccaaacataaaccactttacatt 40339343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 324 - 413
Target Start/End: Original strand, 30958111 - 30958201
Alignment:
Q  324 tcactttcacctaaatatatccaaacataaacca-ctttacatttaactcgcatttaagcaaaaacaactttgcaaaatcaattcattcaa 413  Q
    ||||||| || | ||||||||||||||||||  | ||||||||| ||||| ||||||  ||||| ||| ||| ||||||||||||||||||    
T  30958111 tcacttttacatgaatatatccaaacataaataaactttacattcaactcacatttagccaaaatcaattttacaaaatcaattcattcaa 30958201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 324 - 413
Target Start/End: Original strand, 30973923 - 30974013
Alignment:
Q  324 tcactttcacctaaatatatccaaacataaacca-ctttacatttaactcgcatttaagcaaaaacaactttgcaaaatcaattcattcaa 413  Q
    ||||||| || | ||||||||||||||||||  | ||||||||| ||||| ||||||  ||||| ||| ||| ||||||||||||||||||    
T  30973923 tcacttttacatgaatatatccaaacataaataaactttacattcaactcacatttagccaaaatcaattttacaaaatcaattcattcaa 30974013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 324 - 366
Target Start/End: Complemental strand, 44489426 - 44489384
Alignment:
Q  324 tcactttcacctaaatatatccaaacataaaccactttacatt 366  Q
    ||||||| |||||||||||||||||||||||||||| ||||||    
T  44489426 tcacttttacctaaatatatccaaacataaaccactctacatt 44489384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 836166 - 836129
Alignment:
Q  176 ttgattctggatgtgtaaaatagattttgacatgtttg 213  Q
    |||||| |||||||||||||| ||||||||||||||||    
T  836166 ttgattttggatgtgtaaaattgattttgacatgtttg 836129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 52925771 - 52925722
Alignment:
Q  174 aattgattctggatgtgtaaaatagattttgacatgtttgattgctctca 223  Q
    |||||||||| || ||||| ||| |||||||||||||||| |||||||||    
T  52925771 aattgattctagaggtgtataattgattttgacatgtttggttgctctca 52925722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 296 - 372
Target Start/End: Original strand, 4950530 - 4950606
Alignment:
Q  296 atttttacactgaagtttactattcatctcactttcacctaaatatatccaaacataaaccactttacatttaactc 372  Q
    ||||||||||| || |||| | |||| ||||||||| | |||||||||||||||||||| |||||||| || |||||    
T  4950530 atttttacacttaaatttatttttcaactcactttctcataaatatatccaaacataaatcactttaccttcaactc 4950606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 270 - 371
Target Start/End: Complemental strand, 11791797 - 11791696
Alignment:
Q  270 atttatagcatttgagtctaaacatgatttttacactgaagtttactattcatctcactttcacctaaatatatccaaacataaaccactttacatttaa 369  Q
    |||| |||| ||||||||| ||| ||||||||||||| || |||||| |||| || ||||| || ||||| ||||| | |||| | || |||||||| ||    
T  11791797 atttgtagcttttgagtctcaacgtgatttttacactaaaatttactgttcagcttacttttacgtaaatgtatcctaccatagatcagtttacattcaa 11791698  T
Q  370 ct 371  Q
    ||    
T  11791697 ct 11791696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 294 - 372
Target Start/End: Complemental strand, 14154 - 14076
Alignment:
Q  294 tgatttttacactgaagtttactattcatctcactttcacctaaatatatccaaacataaaccactttacatttaactc 372  Q
    ||||||||||||| || |||| | |||| ||||||||||| | ||| |||||||||||||| |||||||| || |||||    
T  14154 tgatttttacactcaaatttatttttcaactcactttcacatgaatgtatccaaacataaatcactttaccttcaactc 14076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 280 - 371
Target Start/End: Complemental strand, 1024780 - 1024688
Alignment:
Q  280 tttgagtctaaacatgatttttacactgaagtttactattcatctcactttcacctaaa-tatatccaaacataaaccactttacatttaact 371  Q
    ||||||||||||| |||| |||||||| || ||   | | ||||||||||| ||||||| || |||||| |||||||||||||||||| ||||    
T  1024780 tttgagtctaaacgtgatctttacactaaaattaggtgtacatctcacttttacctaaaatacatccaagcataaaccactttacattcaact 1024688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 12306898 - 12306949
Alignment:
Q  170 ccataattgattctggatgtgtaaaatagattttgacatgtttgattgctct 221  Q
    |||||||||||| |||| ||| ||||| |||||||||||||||| |||||||    
T  12306898 ccataattgattttggaggtgcaaaattgattttgacatgtttggttgctct 12306949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 222
Target Start/End: Original strand, 41841085 - 41841136
Alignment:
Q  171 cataattgattctggatgtgtaaaatagattttgacatgtttgattgctctc 222  Q
    ||||||||||| |||| ||||||||| || ||||||||||||| ||||||||    
T  41841085 cataattgattatggaggtgtaaaattgactttgacatgtttggttgctctc 41841136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 334 - 372
Target Start/End: Original strand, 117850 - 117888
Alignment:
Q  334 ctaaatatatccaaacataaaccactttacatttaactc 372  Q
    ||||| ||||||||||| |||||||||||||||||||||    
T  117850 ctaaacatatccaaacaaaaaccactttacatttaactc 117888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 294 - 363
Target Start/End: Complemental strand, 40796029 - 40795960
Alignment:
Q  294 tgatttttacactgaagtttactattcatctcactttcacctaaatatatccaaacataaaccactttac 363  Q
    ||||||| ||||| || |||||||||||  ||||||| || | ||| ||||||| |||||||||||||||    
T  40796029 tgattttaacactcaaatttactattcaaatcacttttacatgaatgtatccaatcataaaccactttac 40795960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University