View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11346_low_3 (Length: 611)
Name: NF11346_low_3
Description: NF11346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11346_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 1 - 601
Target Start/End: Complemental strand, 44620501 - 44619907
Alignment:
| Q |
1 |
ccttctcttttccttagcctttgcctctaacatgttacacgtatgtactttgaattccttccttctatctatctctatctttttatatagcaacacaaca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
44620501 |
ccttctcttttccttagcctttgcctctaacatgttacacgtatgtactttgaattccttccttctatctatctctatctttt----------cacaaca |
44620412 |
T |
|
| Q |
101 |
taacattttccacccacatcattaaacactataaatctttctgtcggacacaacacaattttcatcgtatttgtgaaaacaaccctagtacttcacataa |
200 |
Q |
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|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44620411 |
taacattttccacccacaacaataaacactataaatctttctgtcggacacaacacaattttcatcgtatttgtgaaaacaaccctagtacttcacataa |
44620312 |
T |
|
| Q |
201 |
gtcaatggaagatgagacttctaaaagctaccaatcaaggctcaaatcccacttaggtgattcctcattttctttcattattacattacattcttgttca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44620311 |
gtcaatggaagatgagacttctaaaagctaccaatcaaggctcaaatcccacttaggtgattcctcattttctttcattattacattacattcttgttcg |
44620212 |
T |
|
| Q |
301 |
aactatttttatttgtgttttgtctt-atgtatttagctaaatgnnnnnnn---acatgtttatttggaacagagctcttaatcgattttgaagaggtta |
396 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44620211 |
aactatttttatttgtgttttgtctttatgtatttagctaaatgttttttttttacatgtttatttggaacagagctcttaatcgattttgaagaggtta |
44620112 |
T |
|
| Q |
397 |
atggagatgaagagttgatgacgatttatccatgtccattttgtgaggaggattttgatcttctagagctatgcttccatattgatttggaccatccaat |
496 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44620111 |
atggagatgaagagttgatgacgatttatccatgtccattttgtgaggaggattttgatcttctagagctatgcttccatattgatttggaccatccaat |
44620012 |
T |
|
| Q |
497 |
tgaagccgaatctggggtattttacttatctcacaccttaatcacttttctactcttattaactttttagacttagtcagtatataaataattcatgtac |
596 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
44620011 |
tgaagccgaatctggggtattttacttatctcacaccttaatcacttttctactcttattaactttttagactcagttagtatataaataattcatgtac |
44619912 |
T |
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