View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11346_low_4 (Length: 444)
Name: NF11346_low_4
Description: NF11346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11346_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 12 - 427
Target Start/End: Complemental strand, 50245959 - 50245543
Alignment:
| Q |
12 |
agagacacctctacaatctacaaacacaaaggggaaaaaa-tgaatttaccatttcaaatttgtannnnnnnaataaatgaaacaaaatatccatgtcaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
50245959 |
agagacacctctacaatctacaaacacaaaggggaaaaaaatgaatttaccatttcaaatttgtatttttttaataaatgaaacaaaatatccatgtcaa |
50245860 |
T |
|
| Q |
111 |
attcaatgcctatagagccatgtatgtctaaagtgtgactaagcccaactacttcacttcaatataggttgatcaaagggatctttaaaattagccttct |
210 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50245859 |
attcaatgcctataaagccatgtatgtctaaagtgtgactaagcccaactacttcacttcaatataggttgatcaaagggatctttaaaattagccttct |
50245760 |
T |
|
| Q |
211 |
caccaagatcttggaactcatccacaagattttgaagtcttgcaacaaactcgattaaaagtgaagcaaatgtagccaaagacaaagagctagcactttc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50245759 |
caccaagatcttggaactcatccacaagattttgaagtcttgcaacaaactcgattaaaagtgaagcaaatgtagccaaagacaaagagctagcactttc |
50245660 |
T |
|
| Q |
311 |
ataaactttagattctggctcattcagtaaggcatcaccgcaaaaagagagctgaggccatgacaataagcccttgttcatggtctgtgtaaaactcgac |
410 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50245659 |
ataaactttagattctggctcattcagtatagcatcactgcaaaaagagagctgaggccatgacaataagcccttgttcatggtctgtgtaaaactcgac |
50245560 |
T |
|
| Q |
411 |
tctggcagcgattcttg |
427 |
Q |
| |
|
||||||||||| ||||| |
|
|
| T |
50245559 |
tctggcagcgaatcttg |
50245543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 314
Target Start/End: Original strand, 43814089 - 43814174
Alignment:
| Q |
229 |
catccacaagattttgaagtcttgcaacaaactcgattaaaagtgaagcaaatgtagccaaagacaaagagctagcactttcataa |
314 |
Q |
| |
|
||||||| | ||||||||| ||||| ||||| || || |||||||| | |||||||| | |||||| || ||||||||||||||| |
|
|
| T |
43814089 |
catccaccaaattttgaagccttgctacaaattcaatcaaaagtgatgtaaatgtagttagagacaatgaactagcactttcataa |
43814174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University