View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11346_low_6 (Length: 422)
Name: NF11346_low_6
Description: NF11346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11346_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 104 - 409
Target Start/End: Complemental strand, 36527328 - 36527020
Alignment:
| Q |
104 |
aaatacaatatagtttcatttatgacaagtttgtcatttctcatctaatggaaaacttcttcaaaacttgacttcttaaaatagcattannnnnnnn-gg |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
36527328 |
aaatacaatatagtttcatttatgacaagtttgtcatttctcatctaatggaaaacttcttcaaaacttgacttcttaaaatagcattatttttttttgg |
36527229 |
T |
|
| Q |
203 |
gagcatctattaactactactattcatttattaatacgataatttttaaattttacaaatcttacggcctcccaaaatatttacatgtaattagcagttt |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36527228 |
gagcatctattaactactactattcatttattaatacgataatttttaaattttacaaatcttacggcctcccaaaatatttacatgtaattagcagttt |
36527129 |
T |
|
| Q |
303 |
taacatatttcaattgctgtttttcccatgcaaaatattactattcaattcaatatcagtatctttg--atgcaatagccaacaatcaaaattccaatgc |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
36527128 |
taacatatttcaattgctgtttttcccatgcaaaatattactattcaattcaatatcagtatctttgatatgcaatagccaacaatcaaaattccaatgc |
36527029 |
T |
|
| Q |
401 |
atcatctct |
409 |
Q |
| |
|
||||||||| |
|
|
| T |
36527028 |
atcatctct |
36527020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University