View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11346_low_7 (Length: 348)
Name: NF11346_low_7
Description: NF11346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11346_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 16 - 338
Target Start/End: Complemental strand, 26931854 - 26931535
Alignment:
| Q |
16 |
atatatgcatggttggacagaaaatatatataattaatttagtcataagtttaaatatagggttactaaattacattctagaagttacaaggtgcaatgt |
115 |
Q |
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| T |
26931854 |
atatatgcatggttggacagaaaatatatataa---atttagtcgtaagtttaaatatagggttactaaattacattctagaagttactaggtgcaatgt |
26931758 |
T |
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| Q |
116 |
tatgatgataaaaagatgaatgcattagagtagctagtgttgtgacttgtgatgataatttttaccttgatatgagcattggttatagttgtagagaaag |
215 |
Q |
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| T |
26931757 |
tatgatgataaaaagatgaatgcattagagtagctagtgttgtgacttgtgatgataatttttaccttgatatgagcattggttgtagttgtagaggaag |
26931658 |
T |
|
| Q |
216 |
cttaaggaagactctggttgaggaacaaagcttcttgtgtttccattccattccataattatctaactgtttcactccccttcaactgaaactagtctgg |
315 |
Q |
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| T |
26931657 |
cttaaggaagactctggttgaggaacaaaacttcttgtgtttccattccattccataattatctaactgtttcactccccttcaactgaaactagtctgg |
26931558 |
T |
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| Q |
316 |
cctataagtataacgtatctctg |
338 |
Q |
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| T |
26931557 |
cctataagtataacttatctctg |
26931535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 271
Target Start/End: Original strand, 41796285 - 41796359
Alignment:
| Q |
197 |
gttatagttgtagagaaagcttaaggaagactctggttgaggaacaaagcttcttgtgtttccattccattccat |
271 |
Q |
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|||||||||||||| ||||||||||||||||| | |||||||||||| ||||||| | ||||||| ||||| |
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| T |
41796285 |
gttatagttgtagaagaagcttaaggaagactcagtatgaggaacaaagggtcttgtgctctcattccaatccat |
41796359 |
T |
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