View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11346_low_8 (Length: 334)
Name: NF11346_low_8
Description: NF11346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11346_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 16 - 316
Target Start/End: Original strand, 53714777 - 53715077
Alignment:
| Q |
16 |
gtaaaatatgatatcggtgggtttcatttgctttgaaaaatgttgttggtttatgtgttgtaaaaatttgcatataatgttattttctggttgtaattag |
115 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
53714777 |
gtaaaatatgatatcggtaagtttcatttgctttgaaaaatgttgtttgtttatgtgttgtaaaaatttgcatataatgttattttctgattgtaattag |
53714876 |
T |
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| Q |
116 |
acaacatcgtcnnnnnnnattcggttttggagtctccacattatattcttgtgtgttatgaccatgttcttttattttcactatgccggnnnnnnnaaca |
215 |
Q |
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|||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
53714877 |
acaacatcatctttttttattcggttttggagtctccatattatattcttgtgtgttatgaccatgttcttttattttctgtatgccggtttttctaaca |
53714976 |
T |
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| Q |
216 |
tcaaccggcaccttaataagcaagaaattatttgttttcaactattgtcctcttttaacttctagtaaagtgatgccttcacaaagcataacattgtgtt |
315 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53714977 |
tcaaccagcaccttaataagcaagaaattatttgttttcaactattgtcctcttttaacttctagtaaagtgatgccttcacaaagcataacattgtgtt |
53715076 |
T |
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| Q |
316 |
t |
316 |
Q |
| |
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| |
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| T |
53715077 |
t |
53715077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 31997115 - 31997161
Alignment:
| Q |
62 |
tggtttatgtgttgtaaaaatttgcatataatgttattttctggttg |
108 |
Q |
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| T |
31997115 |
tggtatatgtgttgtaacaatttgcatataatgttattctctcgttg |
31997161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 103
Target Start/End: Complemental strand, 31803840 - 31803808
Alignment:
| Q |
71 |
tgttgtaaaaatttgcatataatgttattttct |
103 |
Q |
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| T |
31803840 |
tgttgtaaagatttgcatataatgttattttct |
31803808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 119
Target Start/End: Original strand, 45123316 - 45123368
Alignment:
| Q |
67 |
tatgtgttgtaaaaatttgcatataatgttattttctggttgtaattagacaa |
119 |
Q |
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|||||||||||||| |||||||||| | ||||||||| ||||| ||| ||||| |
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| T |
45123316 |
tatgtgttgtaaaagtttgcatatagtattattttctagttgtcattggacaa |
45123368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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