View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11347_low_1 (Length: 1036)

Name: NF11347_low_1
Description: NF11347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11347_low_1
NF11347_low_1
[»] chr2 (8 HSPs)
chr2 (774-1021)||(32541264-32541512)
chr2 (273-435)||(32541915-32542077)
chr2 (18-208)||(32542142-32542318)
chr2 (492-651)||(32541686-32541858)
chr2 (715-825)||(32541512-32541622)
chr2 (500-551)||(12489807-12489858)
chr2 (504-551)||(17429280-17429327)
chr2 (494-551)||(9554075-9554132)
[»] chr4 (10 HSPs)
chr4 (500-540)||(44360312-44360352)
chr4 (504-551)||(1211397-1211444)
chr4 (504-551)||(25427867-25427914)
chr4 (492-530)||(6958264-6958302)
chr4 (489-551)||(42285708-42285770)
chr4 (489-551)||(49686908-49686970)
chr4 (494-551)||(1777022-1777079)
chr4 (502-551)||(8598901-8598950)
chr4 (494-551)||(29209180-29209237)
chr4 (494-551)||(44719366-44719423)
[»] chr8 (4 HSPs)
chr8 (492-551)||(39953269-39953328)
chr8 (492-530)||(30812842-30812880)
chr8 (492-551)||(7531649-7531708)
chr8 (501-551)||(18473977-18474027)
[»] chr7 (6 HSPs)
chr7 (489-551)||(48735906-48735968)
chr7 (500-548)||(35172073-35172121)
chr7 (489-524)||(5336133-5336168)
chr7 (500-551)||(19119429-19119480)
chr7 (492-530)||(17759491-17759529)
chr7 (493-551)||(34745966-34746024)
[»] chr5 (7 HSPs)
chr5 (492-530)||(3442897-3442935)
chr5 (504-551)||(4653482-4653529)
chr5 (489-532)||(14911387-14911430)
chr5 (492-551)||(28411894-28411953)
chr5 (492-551)||(28976864-28976923)
chr5 (489-551)||(408499-408561)
chr5 (489-530)||(2075499-2075540)
[»] chr1 (4 HSPs)
chr1 (492-530)||(28528573-28528611)
chr1 (492-551)||(34792354-34792413)
chr1 (500-530)||(10272482-10272512)
chr1 (494-551)||(14225841-14225898)
[»] chr6 (1 HSPs)
chr6 (489-530)||(33084144-33084185)
[»] chr3 (5 HSPs)
chr3 (489-530)||(31452987-31453028)
chr3 (492-548)||(54279238-54279294)
chr3 (492-551)||(7895885-7895944)
chr3 (504-551)||(38060944-38060991)
chr3 (500-530)||(37351633-37351663)


Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 774 - 1021
Target Start/End: Complemental strand, 32541512 - 32541264
Alignment:
Q  774 tttgattaactcagttggattctgtgttgtactggcccagtttttgctt-cctatgttgcgttgtgtcaaatttcatccttttttctccctttctttatg 872  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32541512 tttgattaacttagttggattctgtgttgtactggcccagtttttgctttcctatgttgcgttgtgtcaaatttcatccttttttctccctttctttatg 32541413  T
Q  873 gctctcgttttcaannnnnnnncgtgcttgacttttgtgaaacatgcgggatctatgaactccacaagatggaattaaaactaagactatgaagtgcact 972  Q
    ||||||||||||||        |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32541412 gctctcgttttcaattttttttcgtgcttgacttttgtgaaacatgcgagatctatgaactccacaagatggaattaaaactaagactatgaagtgcact 32541313  T
Q  973 aacgcagacgccatacacacattgacatgtagacactgttttgattcat 1021  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  32541312 aacgcagacgccatacacacattgacatgtagacactgttttgattcat 32541264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 273 - 435
Target Start/End: Complemental strand, 32542077 - 32541915
Alignment:
Q  273 atgttcgaatgttgtcatgtagaattgattttgctttcagaatggattacaattttaagttaaagtttgtagctttttgtcacactcagtaggggttttg 372  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  32542077 atgtttgaatgttgtcatgtagaattgattttgctttcagaatggattgcaatttgaagttaaagtttgtagctttttgtcacactcagtagaggttttg 32541978  T
Q  373 aaatgaagtctataaattgaaggttggagttagaatctattattgtaacataaaatattaaga 435  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32541977 aaatgaaatctataaattgaaggttggagttagaatctattattgtaacataaaatattaaga 32541915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 140; E-Value: 8e-73
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 32542318 - 32542142
Alignment:
Q  18 tgtttcttcctatccttggtgctcttcctgatgccatgctcattcttggtaactaactaaccataattcacttgttaaagtgattctctctttgatttga 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  32542318 tgtttcttcctatccttggtgctcttcctgatgccatgctcattcttggtaactaactaaccataattcacttgttaaagtgattctctctttgatttca 32542219  T
Q  118 ttattcgtagtgaaaattgattttgtaaagttgattcttcgttcagagttgtttaatgtttggttccacttttgaaagtgtgtatgtacag 208  Q
    ||||||||||||||||||              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32542218 ttattcgtagtgaaaatt--------------gattcttcgttcagagttgtttaatgtttggttccacttttgaaagtgtgtatgtacag 32542142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 125; E-Value: 8e-64
Query Start/End: Original strand, 492 - 651
Target Start/End: Complemental strand, 32541858 - 32541686
Alignment:
Q  492 actatggggtcgtttgattcatgtagccgaccccacttaataagataagaattg-------------gttgttctgattctctctatcttaatcacttga 578  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||||||||||    
T  32541858 actatggggtcgtttgattcatgtagccgaccccacttaataagataagaattgattgttgttgttggttgttctgattctctctatcttaatcacttga 32541759  T
Q  579 tttgttagttaaagtgattggttatgttatcttgagcgtgattttggttcactgtcacttggatgaacaggaa 651  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  32541758 tttgttagttaaagtgattggttatgttatcttgagtgtgattttggttcactgtcacttggatgaacaggaa 32541686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 715 - 825
Target Start/End: Complemental strand, 32541622 - 32541512
Alignment:
Q  715 aaggtgttttgtggagatatttctgacttgttatatgactcagtaaagagaatatttcttttgattaactcagttggattctgtgttgtactggcccagt 814  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32541622 aaggtgttttgtggagatatttctgacttgttatatgactcagtaaagagaatatttcttttgattaactcagttggattctgtgttgtactggcccagt 32541523  T
Q  815 ttttgcttcct 825  Q
    || ||||||||    
T  32541522 ttctgcttcct 32541512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 500 - 551
Target Start/End: Complemental strand, 12489858 - 12489807
Alignment:
Q  500 gtcgtttgattcatgtagccgaccccacttaataagataagaattggttgtt 551  Q
    ||||||||||||||||||||||||||||||| |  ||||||  |||||||||    
T  12489858 gtcgtttgattcatgtagccgaccccacttagtgggataaggcttggttgtt 12489807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 504 - 551
Target Start/End: Original strand, 17429280 - 17429327
Alignment:
Q  504 tttgattcatgtagccgaccccacttaataagataagaattggttgtt 551  Q
    ||||||||||||||||||||||||||| | |||||||  |||||||||    
T  17429280 tttgattcatgtagccgaccccacttagtgagataaggcttggttgtt 17429327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 494 - 551
Target Start/End: Complemental strand, 9554132 - 9554075
Alignment:
Q  494 tatggggtcgtttgattcatgtagccgaccccacttaataagataagaattggttgtt 551  Q
    ||||| || |||| ||||||||||||||||||||||||| |||| | | |||||||||    
T  9554132 tatggtgtagtttaattcatgtagccgaccccacttaatgagatgatacttggttgtt 9554075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 500 - 540
Target Start/End: Original strand, 44360312 - 44360352
Alignment:
Q  500 gtcgtttgattcatgtagccgaccccacttaataagataag 540  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  44360312 gtcgtttgattcatgtagccgaccccacttaataggataag 44360352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 504 - 551
Target Start/End: Complemental strand, 1211444 - 1211397
Alignment:
Q  504 tttgattcatgtagccgaccccacttaataagataagaattggttgtt 551  Q
    |||||||||||||||||||||||||||||  ||||||| |||||||||    
T  1211444 tttgattcatgtagccgaccccacttaatgggataagacttggttgtt 1211397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 504 - 551
Target Start/End: Complemental strand, 25427914 - 25427867
Alignment:
Q  504 tttgattcatgtagccgaccccacttaataagataagaattggttgtt 551  Q
    |||||| |||||| ||||||||||||||| |||||||| |||||||||    
T  25427914 tttgatccatgtaaccgaccccacttaatgagataagacttggttgtt 25427867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 492 - 530
Target Start/End: Complemental strand, 6958302 - 6958264
Alignment:
Q  492 actatggggtcgtttgattcatgtagccgaccccactta 530  Q
    ||||||| ||||||||||||||||||||||||| |||||    
T  6958302 actatggcgtcgtttgattcatgtagccgaccctactta 6958264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 489 - 551
Target Start/End: Complemental strand, 42285770 - 42285708
Alignment:
Q  489 aatactatggggtcgtttgattcatgtagccgaccccacttaataagataagaattggttgtt 551  Q
    ||||||||||  | ||||||||||||||||| |||||||||| |  ||||||| |||||||||    
T  42285770 aatactatggcattgtttgattcatgtagccaaccccacttagttggataagacttggttgtt 42285708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 489 - 551
Target Start/End: Original strand, 49686908 - 49686970
Alignment:
Q  489 aatactatggggtcgtttgattcatgtagccgaccccacttaataagataagaattggttgtt 551  Q
    |||| ||||| |||||||||  |||||||||||||||||||| |  ||||||| |||||||||    
T  49686908 aatattatggcgtcgtttgaaccatgtagccgaccccacttagtgggataagacttggttgtt 49686970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 494 - 551
Target Start/End: Complemental strand, 1777079 - 1777022
Alignment:
Q  494 tatggggtcgtttgattcatgtagccgaccccacttaataagataagaattggttgtt 551  Q
    ||||| ||| |||||| ||||||||||||||||||||||  ||||||  |||||||||    
T  1777079 tatggcgtcatttgatccatgtagccgaccccacttaatgggataaggcttggttgtt 1777022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 502 - 551
Target Start/End: Complemental strand, 8598950 - 8598901
Alignment:
Q  502 cgtttgattcatgtagccgaccccacttaataagataagaattggttgtt 551  Q
    |||||||||||||||||||| ||||||||||  ||||||| || ||||||    
T  8598950 cgtttgattcatgtagccgatcccacttaatgggataagactttgttgtt 8598901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 494 - 551
Target Start/End: Complemental strand, 29209237 - 29209180
Alignment:
Q  494 tatggggtcgtttgattcatgtagccgaccccacttaataagataagaattggttgtt 551  Q
    ||||| || |||||||  |||||||||||||||||||||  ||||||| |||||||||    
T  29209237 tatggcgttgtttgatcaatgtagccgaccccacttaatgggataagacttggttgtt 29209180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 494 - 551
Target Start/End: Complemental strand, 44719423 - 44719366
Alignment:
Q  494 tatggggtcgtttgattcatgtagccgaccccacttaataagataagaattggttgtt 551  Q
    ||||| |||||||||| |||||||||||||| ||||| |  ||||||| |||||||||    
T  44719423 tatggtgtcgtttgatccatgtagccgaccctacttagtgggataagacttggttgtt 44719366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.0000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 492 - 551
Target Start/End: Complemental strand, 39953328 - 39953269
Alignment:
Q  492 actatggggtcgtttgattcatgtagccgaccccacttaataagataagaattggttgtt 551  Q
    ||||||| || |||||||||||||||||||||||||||| |  ||||||| |||||||||    
T  39953328 actatggagttgtttgattcatgtagccgaccccacttagtgggataagacttggttgtt 39953269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 492 - 530
Target Start/End: Complemental strand, 30812880 - 30812842
Alignment:
Q  492 actatggggtcgtttgattcatgtagccgaccccactta 530  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  30812880 actatggtgtcgtttgattcatgtagccgaccccactta 30812842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 492 - 551
Target Start/End: Complemental strand, 7531708 - 7531649
Alignment:
Q  492 actatggggtcgtttgattcatgtagccgaccccacttaataagataagaattggttgtt 551  Q
    ||||||| |||||||||||||||||||||| | |||||| || ||||||  |||||||||    
T  7531708 actatggtgtcgtttgattcatgtagccgaactcacttagtaggataaggcttggttgtt 7531649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 501 - 551
Target Start/End: Complemental strand, 18474027 - 18473977
Alignment:
Q  501 tcgtttgattcatgtagccgaccccacttaataagataagaattggttgtt 551  Q
    |||||||||||||||||||||| ||||||| |  ||||||| |||||||||    
T  18474027 tcgtttgattcatgtagccgacaccacttagtgggataagacttggttgtt 18473977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000004; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 489 - 551
Target Start/End: Complemental strand, 48735968 - 48735906
Alignment:
Q  489 aatactatggggtcgtttgattcatgtagccgaccccacttaataagataagaattggttgtt 551  Q
    |||||||||| |||||||||||||||||||| |||||||||| |  ||||||  |||||||||    
T  48735968 aatactatggcgtcgtttgattcatgtagccaaccccacttagtgggataaggtttggttgtt 48735906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 500 - 548
Target Start/End: Complemental strand, 35172121 - 35172073
Alignment:
Q  500 gtcgtttgattcatgtagccgaccccacttaataagataagaattggtt 548  Q
    ||||||||||||||||||||||||| ||||| | |||||||| ||||||    
T  35172121 gtcgtttgattcatgtagccgaccctacttagtgagataagagttggtt 35172073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 489 - 524
Target Start/End: Original strand, 5336133 - 5336168
Alignment:
Q  489 aatactatggggtcgtttgattcatgtagccgaccc 524  Q
    |||||||||| |||||||||||||||||||||||||    
T  5336133 aatactatggcgtcgtttgattcatgtagccgaccc 5336168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 500 - 551
Target Start/End: Complemental strand, 19119480 - 19119429
Alignment:
Q  500 gtcgtttgattcatgtagccgaccccacttaataagataagaattggttgtt 551  Q
    ||||||||||||||||||||||||||||||| |  ||||| |||| ||||||    
T  19119480 gtcgtttgattcatgtagccgaccccacttagtgggataaaaatttgttgtt 19119429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 492 - 530
Target Start/End: Original strand, 17759491 - 17759529
Alignment:
Q  492 actatggggtcgtttgattcatgtagccgaccccactta 530  Q
    ||||||| || ||||||||||||||||||||||||||||    
T  17759491 actatggtgttgtttgattcatgtagccgaccccactta 17759529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 493 - 551
Target Start/End: Original strand, 34745966 - 34746024
Alignment:
Q  493 ctatggggtcgtttgattcatgtagccgaccccacttaataagataagaattggttgtt 551  Q
    |||||| || |||||||||||||||||||||||||||| |  ||||||  |||||||||    
T  34745966 ctatggcgttgtttgattcatgtagccgaccccacttagtgggataaggcttggttgtt 34746024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000004; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 492 - 530
Target Start/End: Complemental strand, 3442935 - 3442897
Alignment:
Q  492 actatggggtcgtttgattcatgtagccgaccccactta 530  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  3442935 actatggcgtcgtttgattcatgtagccgaccccactta 3442897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 504 - 551
Target Start/End: Original strand, 4653482 - 4653529
Alignment:
Q  504 tttgattcatgtagccgaccccacttaataagataagaattggttgtt 551  Q
    ||||||||||||| ||||||||||||| | |||||||| |||||||||    
T  4653482 tttgattcatgtatccgaccccacttagtgagataagacttggttgtt 4653529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 489 - 532
Target Start/End: Original strand, 14911387 - 14911430
Alignment:
Q  489 aatactatggggtcgtttgattcatgtagccgaccccacttaat 532  Q
    |||||||||| ||| |||||| ||||||||||||||||||||||    
T  14911387 aatactatggcgtcatttgatccatgtagccgaccccacttaat 14911430  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 492 - 551
Target Start/End: Original strand, 28411894 - 28411953
Alignment:
Q  492 actatggggtcgtttgattcatgtagccgaccccacttaataagataagaattggttgtt 551  Q
    ||||||| || |||||||||||||||||||||||||||| |  ||||||  |||||||||    
T  28411894 actatggcgttgtttgattcatgtagccgaccccacttagtgggataaggcttggttgtt 28411953  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 492 - 551
Target Start/End: Complemental strand, 28976923 - 28976864
Alignment:
Q  492 actatggggtcgtttgattcatgtagccgaccccacttaataagataagaattggttgtt 551  Q
    ||||||| ||| ||||||||||||||||||||||||||| |  ||||||  |||||||||    
T  28976923 actatggcgtcatttgattcatgtagccgaccccacttagtgggataaggcttggttgtt 28976864  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 489 - 551
Target Start/End: Complemental strand, 408561 - 408499
Alignment:
Q  489 aatactatggggtcgtttgattcatgtagccgaccccacttaataagataagaattggttgtt 551  Q
    |||||||||| ||| |||||| |||||||||||||||||||| |  ||||||  |||||||||    
T  408561 aatactatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgtt 408499  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 489 - 530
Target Start/End: Complemental strand, 2075540 - 2075499
Alignment:
Q  489 aatactatggggtcgtttgattcatgtagccgaccccactta 530  Q
    |||||||||| ||| |||||||||||||||| ||||||||||    
T  2075540 aatactatggcgtcatttgattcatgtagccaaccccactta 2075499  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 492 - 530
Target Start/End: Original strand, 28528573 - 28528611
Alignment:
Q  492 actatggggtcgtttgattcatgtagccgaccccactta 530  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  28528573 actatggcgtcgtttgattcatgtagccgaccccactta 28528611  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 492 - 551
Target Start/End: Complemental strand, 34792413 - 34792354
Alignment:
Q  492 actatggggtcgtttgattcatgtagccgaccccacttaataagataagaattggttgtt 551  Q
    ||||||| ||| |||||| ||||||||||||||||||||||  ||||||  |||||||||    
T  34792413 actatggcgtcatttgatccatgtagccgaccccacttaatgggataaggcttggttgtt 34792354  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 500 - 530
Target Start/End: Original strand, 10272482 - 10272512
Alignment:
Q  500 gtcgtttgattcatgtagccgaccccactta 530  Q
    |||||||||||||||||||||||||||||||    
T  10272482 gtcgtttgattcatgtagccgaccccactta 10272512  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 494 - 551
Target Start/End: Complemental strand, 14225898 - 14225841
Alignment:
Q  494 tatggggtcgtttgattcatgtagccgaccccacttaataagataagaattggttgtt 551  Q
    ||||| |||||||||| |||||||||| ||||||||| |  |||| ||||||||||||    
T  14225898 tatggtgtcgtttgatccatgtagccggccccacttagtgggatatgaattggttgtt 14225841  T

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Target: chr6 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 489 - 530
Target Start/End: Original strand, 33084144 - 33084185
Alignment:
Q  489 aatactatggggtcgtttgattcatgtagccgaccccactta 530  Q
    |||||||||| ||||||||||||||||||||||||| |||||    
T  33084144 aatactatggcgtcgtttgattcatgtagccgaccctactta 33084185  T

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Target: chr3 (Bit Score: 34; Significance: 0.000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 489 - 530
Target Start/End: Complemental strand, 31453028 - 31452987
Alignment:
Q  489 aatactatggggtcgtttgattcatgtagccgaccccactta 530  Q
    |||||||||| ||||||||||||||||||| |||||||||||    
T  31453028 aatactatggcgtcgtttgattcatgtagcagaccccactta 31452987  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 492 - 548
Target Start/End: Original strand, 54279238 - 54279294
Alignment:
Q  492 actatggggtcgtttgattcatgtagccgaccccacttaataagataagaattggtt 548  Q
    ||||||| ||| ||||||  |||||||||| ||||||||||||||||||| ||||||    
T  54279238 actatggcgtcatttgatcaatgtagccgatcccacttaataagataagacttggtt 54279294  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 492 - 551
Target Start/End: Complemental strand, 7895944 - 7895885
Alignment:
Q  492 actatggggtcgtttgattcatgtagccgaccccacttaataagataagaattggttgtt 551  Q
    ||||||| ||| |||||| ||||||||||||||||||||||  ||||||  |||||||||    
T  7895944 actatggcgtcatttgatccatgtagccgaccccacttaatgggataaggcttggttgtt 7895885  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 504 - 551
Target Start/End: Original strand, 38060944 - 38060991
Alignment:
Q  504 tttgattcatgtagccgaccccacttaataagataagaattggttgtt 551  Q
    |||||| |||||||||||||||||||| |  |||||||||||||||||    
T  38060944 tttgatccatgtagccgaccccacttagtgggataagaattggttgtt 38060991  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 500 - 530
Target Start/End: Original strand, 37351633 - 37351663
Alignment:
Q  500 gtcgtttgattcatgtagccgaccccactta 530  Q
    |||||||||||||||||||||||||||||||    
T  37351633 gtcgtttgattcatgtagccgaccccactta 37351663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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