View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11347_low_4 (Length: 495)
Name: NF11347_low_4
Description: NF11347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11347_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 16 - 456
Target Start/End: Original strand, 39214365 - 39214801
Alignment:
| Q |
16 |
caatattaacatcaatcttataatgtggcctggtagggagggaacaagtagttggagaagagaaaatctgaggagtggctacatttacatgcgtattcaa |
115 |
Q |
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| T |
39214365 |
caatattaacatcaatcttataatgtggcctagtagggagggaacaagtagttggagaagagaaaatctgaggagtggctacatttacatgcgtattcaa |
39214464 |
T |
|
| Q |
116 |
catagatttgtgctcctcaggtaacttccagttccagagcctcctccacagcagtct-agtcgctatatcaattgtagtttattggtttcactaaaatga |
214 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
39214465 |
catagatttgtgctcctcaggtaacttccacttccagagcctcctccacagcagtctcag-----atatcaattgtagtttattggtttcactaaaatga |
39214559 |
T |
|
| Q |
215 |
gttaatgttatgatctattcgatgatgcttaaactcgatattttgatgattagttttgatgagttggatatcagatactaggaatatcaatttatactcg |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39214560 |
gttaatgttatgatctattcgatgatgcttaaactcgatattttgatgattagttttgatgagttggatatcagatactaggaatatcaatttatactcg |
39214659 |
T |
|
| Q |
315 |
taaatggagagccagttggtatataaccaccgttttgtttctttctatacgaatcaaatcgaaccaaattaaactacatatgatagaacatatacgttct |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39214660 |
taaatggagagccagttggtatataaccaccgttttgtttctttctatacgaatcaaatcgaaccaaattaaactacatatgatagaacatatacgttct |
39214759 |
T |
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| Q |
415 |
ttcacttatttctagtttttaaaatacatttagtacttctac |
456 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
39214760 |
ttcacttatttctagtttttaaaatacatttagtacttctac |
39214801 |
T |
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