View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11347_low_5 (Length: 466)
Name: NF11347_low_5
Description: NF11347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11347_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 70 - 453
Target Start/End: Original strand, 30256679 - 30257062
Alignment:
| Q |
70 |
ttagaatgcattttcttcttctcaactcttacttaagatgtttctttcttctgttattatgatcttgcaggctggctgagtcaaggcaaccattatggcg |
169 |
Q |
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| T |
30256679 |
ttagaatgcattttcttcttctcaactcttacttaagatgtttctttcttctgttattatgatcttgcaggctggctgagtcaaggcagccattatggcg |
30256778 |
T |
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| Q |
170 |
caaagtaccaatagcttcgagcctaatcaatccatatcgcatagtcattgtcatgcgtcttgttgtcctagttttcttcttccactttcgcatcacaact |
269 |
Q |
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| T |
30256779 |
caaagtaccaatagcttcgagcctaatcaatccatatcgcatagtcattgtcatgcgtcttgttgtcctagttttcttcttccactttcgcatcacaact |
30256878 |
T |
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| Q |
270 |
ccggtgcacgacgcatttgccttatggataatctctgtggtctgcgaaatatggctctctttgtcttggatagtagaccagttccccaagtggttcccca |
369 |
Q |
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| T |
30256879 |
ccggtgcacgacgcatttgccttatggataatctctgtggtctgcgaaatatggctctctttgtcttggatagtagaccagttccccaagtggttcccca |
30256978 |
T |
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| Q |
370 |
tgacacgcgaaacttacttggagcgcttgtccatgaggtttgagcgcgaaggagaaccaaatcttttagccgcagtcgatgtct |
453 |
Q |
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| T |
30256979 |
tgacacgcgaaacttacttggagcgcttgtccatgaggtttgagcgcgaaggagaaccgaatcttttagccgcagtcgatgtct |
30257062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 252
Target Start/End: Original strand, 15170478 - 15170588
Alignment:
| Q |
142 |
tggctgagtcaaggcaaccattatggcgcaaagtaccaatagcttcgagcctaatcaatccatatcgcatagtcattgtcatgcgtcttgttgtcctagt |
241 |
Q |
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||||||| |||| |||||||||||||||||||| |||||| | || ||| | || |||||||| || ||||| ||| ||||| | ||||| |||||| |
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| T |
15170478 |
tggctgaagcaagacaaccattatggcgcaaagttccaataccatcaagcttgataaatccataccgaatagtaattatcatgagacttgtaatcctagc |
15170577 |
T |
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| Q |
242 |
tttcttcttcc |
252 |
Q |
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|||||||||| |
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| T |
15170578 |
attcttcttcc |
15170588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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