View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11347_low_6 (Length: 392)
Name: NF11347_low_6
Description: NF11347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11347_low_6 |
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| [»] scaffold0096 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 1e-94; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 73 - 272
Target Start/End: Complemental strand, 12871174 - 12870976
Alignment:
| Q |
73 |
ctaacagctgctggctgcaaaactccagaaaattaaagctggaaacttttcaaaacaaaactaaagaaacaaccaatgtagcaaatggttttgttcaaat |
172 |
Q |
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| T |
12871174 |
ctaacagctgctggccgcaaaactccagaaaattaaagctggaaacttttcaaaacaaaactaaagaaacaaccaatgtagcaaatggttttgttcaaa- |
12871076 |
T |
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| Q |
173 |
atttcacaaataatagaaaaaccaatgattttgagttgaaaagttcataattttctcatacaaacataaaattaacaactttcttgcagatgtgtaggtt |
272 |
Q |
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| T |
12871075 |
atttcacaaataatagaaaaaccaatgattttgagttgaaaagttcataattttcttctacaaacataaaattaccaactttcttgcagatgtgtaggtt |
12870976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 12871236 - 12871195
Alignment:
| Q |
11 |
cagagaataacagtaatagaactgctacaccagaaggtaact |
52 |
Q |
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| T |
12871236 |
cagacaataacagtaatagaactgctacaccagaaggtaact |
12871195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 348
Target Start/End: Complemental strand, 12870934 - 12870898
Alignment:
| Q |
312 |
ctcaactaccttggtaccccaattgctatattttgat |
348 |
Q |
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| T |
12870934 |
ctcaactaccttgataccccaattgctatattttgat |
12870898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 175; Significance: 4e-94; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 11 - 272
Target Start/End: Complemental strand, 27766395 - 27766135
Alignment:
| Q |
11 |
cagagaataacagtaatagaactgctacaccagaaggtaactnnnnnnnnnnnnnnnnnctcctaacagctgctggctgcaaaactccagaaaattaaag |
110 |
Q |
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| T |
27766395 |
cagacaataacagtaatagaactgctacaccggaaggtaactaaaaccaaaaaacgaaactcctaacagctgctggccgcaaaactccagaaaattaaag |
27766296 |
T |
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| Q |
111 |
ctggaaacttttcaaaacaaaactaaagaaacaaccaatgtagcaaatggttttgttcaaatatttcacaaataatagaaaaaccaatgattttgagttg |
210 |
Q |
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| T |
27766295 |
ttggaaacttttcaaaacaaaactaaagaaacaaccaatgtagcaaatgattttgttcaaa-atttcacaaataatagaaaaaccaatgattttgagttg |
27766197 |
T |
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| Q |
211 |
aaaagttcataattttctcatacaaacataaaattaacaactttcttgcagatgtgtaggtt |
272 |
Q |
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| T |
27766196 |
aaaagttcataattttcttctacaaacataaaattaacaactttcttgcagatgtgtaggtt |
27766135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 312 - 349
Target Start/End: Complemental strand, 27766092 - 27766055
Alignment:
| Q |
312 |
ctcaactaccttggtaccccaattgctatattttgata |
349 |
Q |
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| T |
27766092 |
ctcaactaccttgataccccaattgctatattttgata |
27766055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 18331810 - 18331852
Alignment:
| Q |
173 |
atttcacaaat-aatagaaaaaccaatgattttgagttgaaaa |
214 |
Q |
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| T |
18331810 |
atttcacaaatgaatagaaaaaccaataattttgagttgaaaa |
18331852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 114 - 237
Target Start/End: Original strand, 12537723 - 12537846
Alignment:
| Q |
114 |
gaaacttttcaaaacaaaactaaagaaacaaccaatgtagcaaatggttttgttcaaatatttcacaaat-aatagaaaaaccaatgattttgagttgaa |
212 |
Q |
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| T |
12537723 |
gaaacttttcaaaacaaaaattaagaaaaaaccaatctaacaaacgatatagttcaaa-atgtcacaaatgaatagagaaaccaacgattttaagttgaa |
12537821 |
T |
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| Q |
213 |
aagttcataattttctcatacaaac |
237 |
Q |
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| T |
12537822 |
aagttcataactttcttctacaaac |
12537846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 114 - 237
Target Start/End: Complemental strand, 28859 - 28736
Alignment:
| Q |
114 |
gaaacttttcaaaacaaaactaaagaaacaaccaatgtagcaaatggttttgttcaaatatttcacaaat-aatagaaaaaccaatgattttgagttgaa |
212 |
Q |
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| T |
28859 |
gaaacttttcaaaacaaaaattaagaaataaccaatctaacaaacgatatagttcaaa-atgtcacaaatgaatagagaacccaacgattttaagttgaa |
28761 |
T |
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| Q |
213 |
aagttcataattttctcatacaaac |
237 |
Q |
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| T |
28760 |
aagttcataactttcttctacaaac |
28736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 38950715 - 38950757
Alignment:
| Q |
173 |
atttcacaaat-aatagaaaaaccaatgattttgagttgaaaa |
214 |
Q |
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| T |
38950715 |
atttcacaaatgaatagaaaaaccaataattttgagttgaaaa |
38950757 |
T |
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