View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11348_high_2 (Length: 397)
Name: NF11348_high_2
Description: NF11348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11348_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 49485204 - 49484947
Alignment:
| Q |
1 |
tcatattatttatcccaggtatatgatgaagtgaagaaacaagtaatggatgcaatattggcaatggtattttctgttttccgtatttatattgttttat |
100 |
Q |
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| T |
49485204 |
tcatattatttatcacaggtatatgatgaagtgaagaaacaagtaatggatgcaatattggcaatggtattttctgttttccatatttatattgttttat |
49485105 |
T |
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| Q |
101 |
taacaatttatttctcagttcagtataattatttatggaaacttgttaggattcacaagccaacagatgctagactatgtttgtcaactaatctaatact |
200 |
Q |
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| T |
49485104 |
taacaatttatttctcagttcattataattatttatggaaacttgttaggattcacaagccaacagatgctagactatgtttgtcaactaatctaatact |
49485005 |
T |
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| Q |
201 |
ggtgttacactttaattggnnnnnnntgttttcgctaagccttgatttcttgaatgat |
258 |
Q |
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| T |
49485004 |
ggtgttacactttaattggaaaaaaatgttttcactaagccttgatttctttaatgat |
49484947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 250 - 387
Target Start/End: Complemental strand, 49484919 - 49484782
Alignment:
| Q |
250 |
ttgaatgatagtaaaactagtgatttaattatcttcaaatgctgccttattgaatccatgatagtcatttggttgaatctgtgatttttatttgattttc |
349 |
Q |
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| T |
49484919 |
ttgaatgatagtaaaactagtgatttaattatcttcaaatgctgccttattgaatccatgatagtcatttggttgaatctgtgatttttatttgattttc |
49484820 |
T |
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| Q |
350 |
gctgtgatatctctttcatccttattttctgatgtcca |
387 |
Q |
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| T |
49484819 |
tctgtgatatctcttttatccttattttctgatatcca |
49484782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 250 - 365
Target Start/End: Complemental strand, 49701422 - 49701307
Alignment:
| Q |
250 |
ttgaatgatagtaaaactagtgatttaattatcttcaaatgctgccttattgaatccatgatagtcatttggttgaatctgtgatttttatttgattttc |
349 |
Q |
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| T |
49701422 |
ttgaatgatagtaaaactaatgatttaattatcttcaaatgctgccttattgaatccataatagtcatttggttgaatctgtgattttcatttgattttc |
49701323 |
T |
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| Q |
350 |
gctgtgatatctcttt |
365 |
Q |
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|||| |||||||||| |
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| T |
49701322 |
tctgtaatatctcttt |
49701307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 6 - 122
Target Start/End: Complemental strand, 49701681 - 49701566
Alignment:
| Q |
6 |
ttatttatcccaggtatatgatgaagtgaagaaacaagtaatggatgcaatattggcaatggtattttctgttttccgtatttatattgttttattaaca |
105 |
Q |
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| T |
49701681 |
ttatttatctcaggtatatgatgagatgcatagacaagtaatggatgcaatattagcaatggtattttctgttttccatttttatgtt-atttataaaca |
49701583 |
T |
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| Q |
106 |
atttatttctcagttca |
122 |
Q |
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| T |
49701582 |
atttatttctcagttca |
49701566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 104 - 209
Target Start/End: Complemental strand, 49531769 - 49531665
Alignment:
| Q |
104 |
caatttatttctcagttcagtataattatttatggaaacttgttaggattcacaagccaacagat-gctagactatgtttgtcaactaatctaatactgg |
202 |
Q |
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||||||||||||||||||| |||||||||| || | |||||||| ||||| |||| |||| |||| | ||| || ||||||||||| |||||||||||| |
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| T |
49531769 |
caatttatttctcagttcattataattattgataggaacttgtttggattgacaaaccaagagatagttag-ctccgtttgtcaact-atctaatactgg |
49531672 |
T |
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| Q |
203 |
tgttaca |
209 |
Q |
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||||||| |
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| T |
49531671 |
tgttaca |
49531665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 258 - 348
Target Start/End: Complemental strand, 49529214 - 49529118
Alignment:
| Q |
258 |
tagtaaaactagtgatttaattatcttcaaa-tgctgccttattga-----atccatgatagtcatttggttgaatctgtgatttttatttgatttt |
348 |
Q |
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| T |
49529214 |
tagtaaaaccagacatttaattatcttcaaaatgctgccatattcatcaaaatccataatagtcatttggttgaatttgtgattttcatttgatttt |
49529118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 50240087 - 50240046
Alignment:
| Q |
18 |
ggtatatgatgaagtgaagaaacaagtaatggatgcaatatt |
59 |
Q |
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| T |
50240087 |
ggtatatgatgaattaaataaacaagtaatggatgcaatatt |
50240046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 207
Target Start/End: Complemental strand, 49529389 - 49529302
Alignment:
| Q |
119 |
ttcagtataattatttatggaaacttgttaggattcacaagccaacagatgctagactatgtttgtcaactaatctaatactggtgtta |
207 |
Q |
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| T |
49529389 |
ttcattataattattgatgggagcttgtttggatttacaaaccaagagatagttaactttgtttgtcaact-atctaatactggtgtta |
49529302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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