View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11348_low_1 (Length: 833)
Name: NF11348_low_1
Description: NF11348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11348_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 662; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 662; E-Value: 0
Query Start/End: Original strand, 17 - 718
Target Start/End: Original strand, 46642756 - 46643457
Alignment:
| Q |
17 |
gacatcagtaacaaccaattctcaggaacatttccggaggttgttctttgcattccttcattaaaatacttagacataagatacaacaattttcaaggaa |
116 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
46642756 |
gacatcagtaacaaccaattctcaggaacattcccggaggttgttctttgcattccttcattaaaatacttggacataagatacaacaattttcaaggaa |
46642855 |
T |
|
| Q |
117 |
atgttcctaaaggcctctttgatctcaaacttgatgcacttttcatcaacaacaacaaattcaaattttctttaccagaaaatttcggaaagatgccagc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46642856 |
atgttcctaaaggcctctttgatctcaaacttgatgcacttttcatcaacaacaacaaattcaaattttctttaccagaaaatttcggaaagatgccagc |
46642955 |
T |
|
| Q |
217 |
ttctgttgttgtgttcgcgaacaatgatatacaaggttgtattccatcgagtgtagcgaatatgaaggatacaatcaatgagataattatgacgaacagc |
316 |
Q |
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| T |
46642956 |
ttctgttgttgtgttcgcgaacaatgatatacaaggttgtattccatcgagtgtagcgaatatgaaagatacaatcaacgagataattatgacgaacagc |
46643055 |
T |
|
| Q |
317 |
aaaatgaaaggctgtttacctaatgatataggaaaattggataaagtgacagtgtttgatgttagttttaatgagtttgttggtgaattgcctgaaagta |
416 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46643056 |
agaatgaaaggctgtttacctaatgatataggaaaattggataaagtgacagtgtttgatgttagttttaatgagtttgttggtgaattgcctgaaagta |
46643155 |
T |
|
| Q |
417 |
tcagtggaatgaaaagtttggagcagttgaatgtggcacataataaattttctggtgttattcctgagagtatatgtagattgccaaggttggagaattt |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
46643156 |
tcagtggaatgaaaagtttggagcagttgaatgtggcacataataaattttctggtgttattcctgagagtatatgtagattgccaaggttgaagaattt |
46643255 |
T |
|
| Q |
517 |
gacgtattcgtataattactttagtggtgaatcagagatttgtgttaagttggatgataaggatgatacaaagaattgtattcctcatatgcatttccaa |
616 |
Q |
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|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46643256 |
aacgtattcgtataattacctgagtggtgaatcagagatttgtgttaagttggatgataaggatgatacaaagaattgtattcctcatatgcatttccaa |
46643355 |
T |
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| Q |
617 |
agatcgagtcatgggtgtgatgctttttatgaacatcctgttcattgtactggtgttggttgttcttttgtaactctaccgccaacaccaccttcttgtc |
716 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
46643356 |
agatcgagtcatgggtgtgatgctttttatgaacatcctgttcattgtactggtgttggttgttcttttgtaactctaccgccaccaccaccttcttgtc |
46643455 |
T |
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| Q |
717 |
ca |
718 |
Q |
| |
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|| |
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| T |
46643456 |
ca |
46643457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 739 - 812
Target Start/End: Original strand, 46643472 - 46643539
Alignment:
| Q |
739 |
ggcagcttaccaccattatctctgatgagataagagcttggccttggaatattttattcttttcgtttttgttc |
812 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||| |
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| T |
46643472 |
ggcagcttaccaccattatctctgatgagataagag------cttggaacattttattcttttcttttttgttc |
46643539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 48
Target Start/End: Original strand, 46640464 - 46640495
Alignment:
| Q |
17 |
gacatcagtaacaaccaattctcaggaacatt |
48 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
46640464 |
gacatcagtaacaaccaattctcaggaacatt |
46640495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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