View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11348_low_2 (Length: 440)
Name: NF11348_low_2
Description: NF11348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11348_low_2 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 191 - 440
Target Start/End: Original strand, 35672861 - 35673113
Alignment:
| Q |
191 |
catagtggaaggcaacaaacacatcacacatgtctcctgaat---cctcctaatatattccctttcaccaaaaacatccaaacacaagttacaccataaa |
287 |
Q |
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| T |
35672861 |
catagtggaaggcaacaaacacatcacacatgtctcctgaatgctcctcctaatatattccctttcactaaaaacatccaaacacaagttacaccataaa |
35672960 |
T |
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| Q |
288 |
caaaaagtgacccaaactttgagtcatagttttcaaccctagttcaggtttttgttcttcacgtcatcatcatattcatggcatcttcaactcacactca |
387 |
Q |
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| T |
35672961 |
caaaaagtgacccaaactttgagtcattgttttcaaccctagttcaggtttttgttcttcacgtcatcatcatattcatggcatcttcaactcacactca |
35673060 |
T |
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| Q |
388 |
tcaaatactaccacaaaaccttcatggtggaggctccacctcagcaccaccac |
440 |
Q |
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| T |
35673061 |
tcaaatactaccacaaaaccttcatggtggaggctccacctcagcaccaccac |
35673113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 14 - 112
Target Start/End: Original strand, 35672684 - 35672782
Alignment:
| Q |
14 |
aggcataatcgtgattttttcgggataatacttttccctttaactagtatttcccttcagacattaatcattaactatactatcgcattttgatcaggc |
112 |
Q |
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| T |
35672684 |
aggcataatcgtgattttttcgggataatacttttcccttcaactagtatttcccttcagacattaatcattaactatactatcgcattttgatcaggc |
35672782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 214 - 351
Target Start/End: Original strand, 35669663 - 35669804
Alignment:
| Q |
214 |
tcacacatgtctcctgaatcctcctaatatattccctttcaccaaaaacatccaaacacaagttacac--cataaac-aaaaagtgacccaaac---ttt |
307 |
Q |
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| T |
35669663 |
tcacaaatgtctcctgaatcctcctaatatatt-cgattcactaaatagagccaaacacaagttacacaacataaacaaaaaagtgacccaaactttttt |
35669761 |
T |
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| Q |
308 |
gagtcatagttttcaaccctagttcaggtttttgttcttcacgt |
351 |
Q |
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| T |
35669762 |
gagttctagttttcaaccgt-gttcaagtttttgtttttcacgt |
35669804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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