View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11348_low_4 (Length: 360)
Name: NF11348_low_4
Description: NF11348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11348_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 20 - 167
Target Start/End: Complemental strand, 38885818 - 38885671
Alignment:
| Q |
20 |
ttgagttgcatggttttgcttatgagcctaggttggctacacctgttactgctttacttgatcaattggctatgccacttccacagttttaattcatgga |
119 |
Q |
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| T |
38885818 |
ttgagttgcatggttttgcttatgagcctaggttggctacacctgttattgctttacttgatcaattggctatgccacttccacagttttaattcatgga |
38885719 |
T |
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| Q |
120 |
tgcttaaaatattggagaattaattggttggttggtttatatcaatgt |
167 |
Q |
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| T |
38885718 |
tgcttaaaatattggagaattaattggttggttggtttatatcaatgt |
38885671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 250 - 347
Target Start/End: Complemental strand, 38885602 - 38885506
Alignment:
| Q |
250 |
aacctagctagctagtcatgaaaagtgcatcttaagtgtaatactccgttaacttgtagtagtaatgatccgtttaataacttaaaattgttcctctt |
347 |
Q |
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| T |
38885602 |
aacctagctagctagtcatgaaaagtgcatcttcagtgtaatactccgttaacttgtagtagtaatgatccgtttaataactt-aaattgttcctctt |
38885506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 2984003 - 2983945
Alignment:
| Q |
20 |
ttgagttgcatggttttgcttatgagcctaggttggctacacctgttactgctttactt |
78 |
Q |
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| T |
2984003 |
ttgagttgcatgattttgcttatgagcctaggtttgctacacctgttactcctctactt |
2983945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 2996451 - 2996509
Alignment:
| Q |
20 |
ttgagttgcatggttttgcttatgagcctaggttggctacacctgttactgctttactt |
78 |
Q |
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| T |
2996451 |
ttgagttgcatggtcttgcttatgagcctaggtttgctgaaccttttactcctctactt |
2996509 |
T |
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