View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11348_low_6 (Length: 246)
Name: NF11348_low_6
Description: NF11348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11348_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 20597805 - 20598034
Alignment:
| Q |
1 |
cgacatgaacatatttgactttgttccagatatcttcatgaaggacaaatatgtagcatgttacagtagttccatttatccagctaatggtcaaagttta |
100 |
Q |
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| T |
20597805 |
cgacatgaacatatttgactttgttccagatatcttcatgaaggacaaatatgtagcatgttacagtagttccatttatccagctaatggtcaaagttta |
20597904 |
T |
|
| Q |
101 |
tggcaaaggactgagtacactaatcttcagccaccacccat-nnnnnnnncaacctggtagaccaaaaaagagaagaaacaaggatgccaatgaattgtt |
199 |
Q |
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| T |
20597905 |
tggcaaaggactgagtacactgatcttcagccaccacccataaaaaaaaacaacctggtagaccaaaaaagagaagaaacaaggatgccaatgaattgtt |
20598004 |
T |
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| Q |
200 |
ggacaacagtcagatgaaaagggcaagatg |
229 |
Q |
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|||||||| ||||||||||||||||||||| |
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| T |
20598005 |
ggacaacactcagatgaaaagggcaagatg |
20598034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 8698806 - 8699033
Alignment:
| Q |
1 |
cgacatgaacatatttgactttgttccagatatcttcatgaaggacaaatatgtagcatgttacagtagttccatttatccagctaatggtcaaagttta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
8698806 |
cgacatgaacatatttgactttgttccagatatcttcatgaaggacaaatatgtagcatgttactctagttccatttatccggctaatggtcaaagttta |
8698905 |
T |
|
| Q |
101 |
tggcaaaggactgagtacactaatcttcagccaccacccatnnnnnnnncaacctggtagaccaaaaaagagaagaaacaaggatgccaatgaattgttg |
200 |
Q |
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||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
8698906 |
tggcaaaggactgagtacactgatcttcagccaccacccat-caaaaaacaacctggtagaccaaaaaagagaagaaacaaggatgctaatgaattgttg |
8699004 |
T |
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| Q |
201 |
gacaacagtcagatgaaaagggcaagatg |
229 |
Q |
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||||||| ||||||||||||||||||||| |
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| T |
8699005 |
gacaacactcagatgaaaagggcaagatg |
8699033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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