View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11349_high_2 (Length: 376)
Name: NF11349_high_2
Description: NF11349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11349_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 30 - 155
Target Start/End: Complemental strand, 55444 - 55319
Alignment:
| Q |
30 |
acaaagaatgcttaagttgaaggatgtccacctgaaggttcttccatacgtattttaggttcccaattctagattggtttttgctagacagttgaaaaac |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55444 |
acaaagaatgcttaagttgaaggatgtccacctgaaggttcttccataggtattttaggttcccaattctagattggtttttgctagacagttgaaaaac |
55345 |
T |
|
| Q |
130 |
tgtagaggatgcttcaattagccaat |
155 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
55344 |
tgtagaggatgcttcaattagccaat |
55319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 319 - 376
Target Start/End: Complemental strand, 55322 - 55265
Alignment:
| Q |
319 |
caatagttctataacatttgtgtttactactaccacaatttctattaaatataattga |
376 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
55322 |
caatagttctataacatttgtgtttgctactaccacaatttctattaaatataattga |
55265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 30 - 228
Target Start/End: Complemental strand, 33755139 - 33754949
Alignment:
| Q |
30 |
acaaagaatgcttaagttgaaggatgtccacctgaaggttcttccatacgtattttaggttcccaattctagattggtttttgctagacagttgaaaaac |
129 |
Q |
| |
|
||||||| | ||||||||||||| |||||||||||||||| |||||| ||||||| ||| ||| ||| ||||||| || ||||||||| |
|
|
| T |
33755139 |
acaaagagtacttaagttgaagggtgtccacctgaaggttgttccatcggtattttgggt--------ctatattagtttttgtcgctcatttgaaaaac |
33755048 |
T |
|
| Q |
130 |
tgtagaggatgcttcaattagccaatgattttaactttcttacaaaaactattttgtagaatgtaacctttttaggacgcataagctgcaaatccatta |
228 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||| |||| |||||||||| |||||||||||||||| ||||| |
|
|
| T |
33755047 |
tgtagaggatgcttcaattagccaaagattttaactttcttacaaaaactagtcggtaagttgtagcctttttagggcgcataagctgcaaatacatta |
33754949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University