View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11349_high_4 (Length: 324)

Name: NF11349_high_4
Description: NF11349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11349_high_4
NF11349_high_4
[»] chr2 (8 HSPs)
chr2 (23-311)||(11119116-11119404)
chr2 (23-306)||(11111345-11111628)
chr2 (23-294)||(10793178-10793449)
chr2 (23-268)||(11156597-11156842)
chr2 (23-267)||(11137655-11137899)
chr2 (23-152)||(11145960-11146089)
chr2 (23-267)||(11149929-11150173)
chr2 (75-133)||(11183613-11183671)


Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 23 - 311
Target Start/End: Original strand, 11119116 - 11119404
Alignment:
Q  23 ccaacaactcctgataaattagacaagaactaccacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtg 122  Q
    ||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11119116 ccaacaactcccgataaattcgacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtg 11119215  T
Q  123 cagataccattagcattgtcaacaactttggaaacaaccaaaatgttttcttccagaactttataaattcaatgattaaaatgggtaatattggcgtgct 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11119216 cagataccattagcattgtcaacaactttggaaacaaccaaaatgttttcttccagaactttataaattcaatgattaaaatgggtaatattggcgtgct 11119315  T
Q  223 tactggaaagaaaggagaaattagaaagcagtgcaattttgttaacaagaaatcttctgaattggatcttgctagtgtggcctcagaat 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  11119316 tactggaaagaaaggagaaattagaaagcagtgcaattttgttaacaagaaatcttctgaattggatcttgctagtgtgacctcagaat 11119404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 23 - 306
Target Start/End: Original strand, 11111345 - 11111628
Alignment:
Q  23 ccaacaactcctgataaattagacaagaactaccacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtg 122  Q
    ||||| |||||||||| ||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  11111345 ccaacgactcctgatacattggacaagaacttctacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattattctcaacaccgggtg 11111444  T
Q  123 cagataccattagcattgtcaacaactttggaaacaaccaaaatgttttcttccagaactttataaattcaatgattaaaatgggtaatattggcgtgct 222  Q
    |||||||||||||||||||||||| ||||| ||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||    
T  11111445 cagataccattagcattgtcaacagctttgcaaatagccaaaatgttttctttcagaactttataaattcaatgattaaaatgggtaatattgatgtgct 11111544  T
Q  223 tactggaaagaaaggagaaattagaaagcagtgcaattttgttaacaagaaatcttctgaattggatcttgctagtgtggcctc 306  Q
    ||| ||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||  | |||||||||    
T  11111545 taccggaaagaaaggagaaattagaaaacaatgcaattttattaacaagaaatcttctgaattggatcttggcattgtggcctc 11111628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 23 - 294
Target Start/End: Complemental strand, 10793449 - 10793178
Alignment:
Q  23 ccaacaactcctgataaattagacaagaactaccacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtg 122  Q
    ||||| |||||||||| ||| |||||||||| | ||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||   ||    
T  10793449 ccaactactcctgatacattggacaagaacttctacaacaatcttcaggttaaaaagggtttgcttcaaagtgaccaagaattgttttcaacaccaaatg 10793350  T
Q  123 cagataccattagcattgtcaacaactttggaaacaaccaaaatgttttcttccagaactttataaattcaatgattaaaatgggtaatattggcgtgct 222  Q
    ||||||||| ||||||||| || |||||||  || ||||||| || ||||||  ||| |||||  ||  ||||||||||||||||||||||||| |||||    
T  10793349 cagataccactagcattgttaataactttgccaataaccaaagtgctttctttgagagctttaagaaagcaatgattaaaatgggtaatattggtgtgct 10793250  T
Q  223 tactggaaagaaaggagaaattagaaagcagtgcaattttgttaacaagaaatcttctgaattggatcttgc 294  Q
    ||| ||||||||||||||||| || || || ||||||||||||||||| ||||||||||| || ||||||||    
T  10793249 taccggaaagaaaggagaaataaggaaacaatgcaattttgttaacaaaaaatcttctgagttagatcttgc 10793178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 23 - 268
Target Start/End: Original strand, 11156597 - 11156842
Alignment:
Q  23 ccaacaactcctgataaattagacaagaactaccacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtg 122  Q
    ||||| |||||||||||||| |||||||||||  ||  |||||||||||  |||||||| ||||| |||||||| ||||| |||||||||||| | ||||    
T  11156597 ccaacgactcctgataaatttgacaagaactattactccaatcttcaagtgaaaaagggcttgctccaaagtgatcaagagttgttctcaacatccggtg 11156696  T
Q  123 cagataccattagcattgtcaacaactttggaaacaaccaaaatgttttcttccagaactttataaattcaatgattaaaatgggtaatattggcgtgct 222  Q
    ||||||||||||||||||||||||| ||  | | | | ||||| | ||||||  ||| |||||    | |||||||||||||||| |||||||| |||||    
T  11156697 cagataccattagcattgtcaacaaattcagcaccgatcaaaacgctttctttgagagctttaaggctgcaatgattaaaatgggcaatattggtgtgct 11156796  T
Q  223 tactggaaagaaaggagaaattagaaagcagtgcaattttgttaac 268  Q
     || || | ||||||||| |||||||| || ||||| |||||||||    
T  11156797 aacagggacgaaaggagagattagaaaacaatgcaactttgttaac 11156842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 267
Target Start/End: Original strand, 11137655 - 11137899
Alignment:
Q  23 ccaacaactcctgataaattagacaagaactaccacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtg 122  Q
    ||||| |||||||||||||| |||||||||||| ||  ||||||||| |||||||||||||||||||| |||||||||||  | ||||| ||| | ||||    
T  11137655 ccaacgactcctgataaatttgacaagaactactactccaatcttcagggtaaaaagggtttgcttcagagtgaccaagagcttttctcgacatctggtg 11137754  T
Q  123 cagataccattagcattgtcaacaactttggaaacaaccaaaatgttttcttccagaactttataaattcaatgattaaaatgggtaatattggcgtgct 222  Q
    | ||||||||||||||||||||||| ||  |     || |||||| ||||||  | | ||||  |    | ||||||||||||||||||||||| |||||    
T  11137755 ctgataccattagcattgtcaacaagttcagtgctgacaaaaatgctttctttgatagctttgaagccgccatgattaaaatgggtaatattggtgtgct 11137854  T
Q  223 tactggaaagaaaggagaaattagaaagcagtgcaattttgttaa 267  Q
     || || || |||||||| |||||||| || ||||||||||||||    
T  11137855 gaccgggaaaaaaggagagattagaaaacattgcaattttgttaa 11137899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 23 - 152
Target Start/End: Original strand, 11145960 - 11146089
Alignment:
Q  23 ccaacaactcctgataaattagacaagaactaccacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtg 122  Q
    ||||| |||||||||||||| |||||||||||  ||   ||||||||||  ||||| ||||||||||||||||| ||||| |||||||||||| | ||||    
T  11145960 ccaactactcctgataaatttgacaagaactattactctaatcttcaagtgaaaaaaggtttgcttcaaagtgatcaagagttgttctcaacatctggtg 11146059  T
Q  123 cagataccattagcattgtcaacaactttg 152  Q
    | ||||||||||||||||||||||||||||    
T  11146060 ctgataccattagcattgtcaacaactttg 11146089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 23 - 267
Target Start/End: Original strand, 11149929 - 11150173
Alignment:
Q  23 ccaacaactcctgataaattagacaagaactaccacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtg 122  Q
    ||||| |||||||||||||| |||||||||||  ||   ||||||||||  |||||||||||||| |||||||| ||||| |||||||||||| | |||     
T  11149929 ccaacgactcctgataaatttgacaagaactattactctaatcttcaagtgaaaaagggtttgctccaaagtgatcaagagttgttctcaacatctggtt 11150028  T
Q  123 cagataccattagcattgtcaacaactttggaaacaaccaaaatgttttcttccagaactttataaattcaatgattaaaatgggtaatattggcgtgct 222  Q
    ||||||||||||||||||||||||| |||| || | | ||||| | ||| ||  ||| |||||    | | ||||| |||||||| |||||||| ||| |    
T  11150029 cagataccattagcattgtcaacaaatttgcaaccgatcaaaaagctttttttgagagctttaaggctgctatgatcaaaatgggaaatattggtgtgtt 11150128  T
Q  223 tactggaaagaaaggagaaattagaaagcagtgcaattttgttaa 267  Q
     ||||| ||  ||||||| |||||||| || ||||| ||||||||    
T  11150129 aactgggaaacaaggagagattagaaaacaatgcaactttgttaa 11150173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 133
Target Start/End: Complemental strand, 11183671 - 11183613
Alignment:
Q  75 aaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtgcagataccatt 133  Q
    ||||||| ||| |||| ||||||||||||||||| || ||||| ||||| |||||||||    
T  11183671 aaaaggggttgtttcagagtgaccaagaattgttttccacacctggtgctgataccatt 11183613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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