View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11349_low_1 (Length: 508)
Name: NF11349_low_1
Description: NF11349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11349_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 1 - 490
Target Start/End: Complemental strand, 44939361 - 44938872
Alignment:
| Q |
1 |
ctgagcataaaaatcatagtacacataaaaaatttccttctctagattcctattgtagccttagccgacctgcctaaagagataattccccaatatgaga |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
44939361 |
ctgagcataaaaatcatattacacataaaaaatttccttctctaaattcctattgtagccttagccgacctgcctaaagagataattccccaatattaga |
44939262 |
T |
|
| Q |
101 |
gtatgtcagtgatgcagggttgatgataaatattggggctgcaagaatgggttgtgaaacaaggaagcatcaataaagaacagttgatcggaattataat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
44939261 |
gtatgtcagtgatgcagggttgatgataaatattggggctgcaagaatgggttgtgaaacaaggaagcatcaataaaaaacagttgatcggaattataat |
44939162 |
T |
|
| Q |
201 |
gaaatgccgtcaaattatccatcaatagaatttctaggccttgagaaacacattattcacaatggaagcatggctggcccataattcatatgtcctcaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
44939161 |
gaaatgccgtcaaattatccatcaatagaatttctaggccttgagaaacacattattcacaatggaagcatggctggcccataattcacatgtcctcaaa |
44939062 |
T |
|
| Q |
301 |
tcagagcaatcagataccaagttgaaaaaagaggaagcatagttgtattttataggcaagcagaatttgtcctaactaatgagatgagatacaagaaaat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44939061 |
tcagagcaatcagataccaagttgaaaaaagaggaagcatagttgtattttataggcaagcagaatttgtcctaactaatgagatgagatacaagaaaat |
44938962 |
T |
|
| Q |
401 |
aaaatcagaataaaaactgtacacaatcagtcccctgattacagttatatcacaatacagaagaaatacaagcatttgatatgctattaa |
490 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44938961 |
aaaatcaaaataaaaactgtacacaatcagtcccctgattacagttatatcacaatacagaagaaatacaagcatttgatatgctattaa |
44938872 |
T |
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