View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1134_high_3 (Length: 425)
Name: NF1134_high_3
Description: NF1134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1134_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 9 - 418
Target Start/End: Original strand, 45547194 - 45547605
Alignment:
| Q |
9 |
attattttaatgttcgagaatgaatcatgcatgccaattgtcatttatgnnnnnnnnn-caggatggagaagagaatccttatgacatgaaattgaagaa |
107 |
Q |
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| T |
45547194 |
attattttaatgttcgagaacgaatcatgcatgccaattgtcatttatgttttttttttcaggatggagaagagaatccttatgacatgaaattgaagaa |
45547293 |
T |
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| Q |
108 |
agctacatggattccacacctcttgcgggtcagtgtttctcagaatgagtataatggtgagaagaggcaaaggataacagcacgggccgttgttcctatt |
207 |
Q |
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| T |
45547294 |
agctacatggattccacacctcttgcgggtcagtgtttctcagaatgagtataatggtgagaagaggcaaaggataacagcacgggccgttgttcctatt |
45547393 |
T |
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| Q |
208 |
gactttgctgctgagtctaaattcctccttgaagacatatcaaagatggtagcctctcattaagatggaaatgctggtttaatg-tttctagatcttttg |
306 |
Q |
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| T |
45547394 |
gactttgctgctgagtctaaattcctccttgaagacatatcaaagatggtagcctctcattaagatggaaatgctggtttgatgttttctagatctttta |
45547493 |
T |
|
| Q |
307 |
gttcactgctcttcaagtagatgttgctgcttgtaattattaatcctcggatggtttattatatattttgtctgactcaagaaacatcaacggaaatttc |
406 |
Q |
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| T |
45547494 |
gttcactgctcttcaagtagatgttgctgcttgtaattattaatcctcgggtggtttattacatattttgtctgactcaagaaacatcaacggaaatttc |
45547593 |
T |
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| Q |
407 |
ttgcctttggtt |
418 |
Q |
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| T |
45547594 |
ttgcctttggtt |
45547605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 67 - 409
Target Start/End: Original strand, 45551819 - 45552161
Alignment:
| Q |
67 |
caggatggagaagagaatccttatgacatgaaattgaagaaagctacatggattccacacctcttgcgggtcagtgtttctcagaatgagtataatggtg |
166 |
Q |
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||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || | |
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| T |
45551819 |
caggagggagaagagaatccatatctaatgaaattgaagaaagctacatggattccacacctcttgcgggtcagtgtttctcagaatgagaacaacaacg |
45551918 |
T |
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| Q |
167 |
agaagaggcaaaggataacagcacgggccgttgttcctattgactttgctgctgagtctaaattcctccttgaagacatatcaaagatggtagcctctca |
266 |
Q |
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| T |
45551919 |
agaagaggcaaaagattacagccgtggcagttgttcctgttgacttggctgc-gaatctaaatttctccttgaagatatatcgaagatgacagcctctca |
45552017 |
T |
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| Q |
267 |
ttaagatggaaatgctggtttaatgtttctagatcttttggttcactgc-tcttcaagtagatgttgctgcttgtaattattaatcctcggatggtttat |
365 |
Q |
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|||||||||||||||| || ||| |||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||| || | |||| |
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| T |
45552018 |
ataagatggaaatgctgattcaatctttctagatcttttggttcactgctttttcaagtagatgttgctgcttgtaaatattaatccttagacgatttag |
45552117 |
T |
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| Q |
366 |
tatatattttgtctgactcaagaaacatcaacggaaatttcttg |
409 |
Q |
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||||||||||| |||| || ||||| ||||| |||||||||||| |
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| T |
45552118 |
tatatattttggctgattccagaaatatcaatggaaatttcttg |
45552161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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