View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1134_high_5 (Length: 370)
Name: NF1134_high_5
Description: NF1134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1134_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 98 - 246
Target Start/End: Original strand, 44671447 - 44671595
Alignment:
| Q |
98 |
agatgagtgtattttatatgtttatatttttattaaattgtttagccttcttaacaagtcatatgcaacattttttcgttttggtttgatttggtggtgt |
197 |
Q |
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| T |
44671447 |
agatgagtgtattttatatgtttatatttttattaaattgtttagccttcttaacaagtcatatgcaacattttttcgttttggtttgatttggtggtgt |
44671546 |
T |
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| Q |
198 |
tggtctgagtctttgaaaaataatctcatgttcgatttcctttgatatc |
246 |
Q |
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| T |
44671547 |
tggtctgagtctttgaaaaataatctcatgttcgatttcctttgatatc |
44671595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 313 - 370
Target Start/End: Original strand, 44671662 - 44671719
Alignment:
| Q |
313 |
caagtcccacgtaaccattaaaatacaaaaatgttagattgattcgaatattggagct |
370 |
Q |
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| T |
44671662 |
caagtcccacataaccattaaaatacaaaaatgttagattgattcgaatattggagct |
44671719 |
T |
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