View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1134_low_1 (Length: 622)
Name: NF1134_low_1
Description: NF1134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1134_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 424; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 28 - 482
Target Start/End: Complemental strand, 3748713 - 3748259
Alignment:
| Q |
28 |
cacctttcccgtacatagataaccacatataaagtaaataattggaccctcatcttccattgcaggataaagaaagtaaagtaactttacaataacttca |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3748713 |
cacctttcccgtacatagataaccacatataaagtaaataattggaccctcatcttccattgcaggataaagaaagtaaagtaactttacaataacttca |
3748614 |
T |
|
| Q |
128 |
tgaactaattaaatattctacttattggtttaagctgtattgttttgattatgttgagaacaatataattgattttttaaatgaaggttatttataaaag |
227 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
3748613 |
tgaactaattaaatatactacttattggtttaagctctattgttttgattatgttgagaacaatataattgattttttaaatgaagat-atttataaaag |
3748515 |
T |
|
| Q |
228 |
tgatattgttttaacgtggtacatggtcatttcaactatatatgttgatacctccaatgaaccaccaatataacc-tccaaagcattacatggctctaga |
326 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3748514 |
tgatattgttttaatgtggtacatggtcatttcaactatatatgttgatacctccaatgaaccaccaatataaccctccaaagcattacatggctctaga |
3748415 |
T |
|
| Q |
327 |
aaaactgtatgggtagattaaaaaagattgataataataaattgaaatcatgattttcggaacaatatactttccataccttggcttctagacaaactat |
426 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3748414 |
aaaactgtatgggtagattaaaaaagattgataataataaattgaaatcatgattttcggaacaatatactttccataccttggcttctagacaaactat |
3748315 |
T |
|
| Q |
427 |
atggattatggacatattaaaagatattgataataacaaattgataattggacata |
482 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3748314 |
atggattatggacatattaaaagatattgataataacaaattgataattggacata |
3748259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 317 - 373
Target Start/End: Complemental strand, 3789088 - 3789032
Alignment:
| Q |
317 |
tggctctagaaaaactgtatgggtagattaaaaaagattgataataataaattgaaa |
373 |
Q |
| |
|
|||||||||| | ||| ||||||| |||||||| | ||||||||||||||||||||| |
|
|
| T |
3789088 |
tggctctagacacactatatgggtggattaaaacaaattgataataataaattgaaa |
3789032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University