View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1134_low_11 (Length: 423)
Name: NF1134_low_11
Description: NF1134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1134_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 6 - 413
Target Start/End: Complemental strand, 5657620 - 5657204
Alignment:
| Q |
6 |
aacatgcactacaagtaggtccttaaaattttaaataatttgtatttgcgtctgtaagttc---------aacgacatagttacaaattatttaaaaatt |
96 |
Q |
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| T |
5657620 |
aacatgcactataagtaggtccttaaaattttaaataatttatatttgcatctgtaagttccgtaagttcaacgacatagttacaaattatttaaaaatt |
5657521 |
T |
|
| Q |
97 |
tagggactcgatttnnnnnnnnnnnn---gtagtttaagaacctaattacaaatcaataacaaatttaggggcccagatacaatannnnnnnnnnnnaat |
193 |
Q |
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| T |
5657520 |
tagggacacgatttaaaaaaaaaaaaaaagtagtttaaggacctaattacaaatcaataacaaatttaggggcccaggtacaatattttttttt---aat |
5657424 |
T |
|
| Q |
194 |
tcagtgacctatttaaattttttaaaatagtttaggacctagagaatagttaaacctaattcaaatcatctttagcaacaacaaaaaagaaaatgattta |
293 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5657423 |
tcagtgacctatttaaattttttgaaatagtttaggacctagagaatagttaaacctaattcaaatcatctttagcaacaacaaaaaagaaaatgattta |
5657324 |
T |
|
| Q |
294 |
tagattattaccctatctgcaatgttggattgcactccaaaggctgaaagaagctttgtgagtgagcattttgattaccatatgccatactttgatcacc |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5657323 |
tagattattaccctatctgcaatgttggattgcactccaaaggctgaaagaagctttgtgagtgagcattttgattaccatatgccatactttgatcacc |
5657224 |
T |
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| Q |
394 |
agcttcccgtgtttgcctat |
413 |
Q |
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|||||||| ||||||||||| |
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| T |
5657223 |
agcttcccatgtttgcctat |
5657204 |
T |
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