View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1134_low_13 (Length: 410)
Name: NF1134_low_13
Description: NF1134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1134_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 24 - 335
Target Start/End: Complemental strand, 49518225 - 49517928
Alignment:
| Q |
24 |
tcatcaataataacattctccttccccattttgtccttccnnnnnnnaaattttagattatatcccttgagaccagtttctatccccttgtcatcagcaa |
123 |
Q |
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| T |
49518225 |
tcatcaataataacattctccttccccattttgtccttcctttttttaaattttagattatatcccttgagaccagtttctatccccttgtcatcaggaa |
49518126 |
T |
|
| Q |
124 |
gcaatagttcaagctcttctttgcttgctttgtcaacagcaaccatatccatgtgttggaggttattatgatctttgtcatttttactcatttgtgcttt |
223 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49518125 |
gcaatagttcaagct--------------ttgtcaacagcaaccatatccatgtgttggaggttattatgatctttgtcatttttactcatttgtgcttt |
49518040 |
T |
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| Q |
224 |
cttcctcttcttaacacaaggttcctcaatgaggaactcatctgcttcttcattagcttgttgatcactatcatcatctgatgaatacttcaatttattt |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49518039 |
cttcctcttcttaacacaaggttcctcaatgaggaactcatctgcttcttcattagcttgttgatcactatcatcatctgatgaatacttcaatttattt |
49517940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 24 - 335
Target Start/End: Complemental strand, 27747596 - 27747306
Alignment:
| Q |
24 |
tcatcaataataacattctccttccccattttgtccttccnnnnnnnaaattttagattatatcccttgagaccagtttctatccccttgtcatcagcaa |
123 |
Q |
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||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||| ||||||||||||||| || ||||||||||||||| |
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| T |
27747596 |
tcatcaataataacattctcctttcccattttgtccttcctttttttaaattttagactatatcctttgagaccagtttctgtcgccttgtcatcagcaa |
27747497 |
T |
|
| Q |
124 |
gcaatagttcaagctcttctttgcttgctttgtcaacagcaaccatatccatgtgttggaggttattatgatctttgtcatttttactcatttgtgcttt |
223 |
Q |
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| T |
27747496 |
gcaataactcaagctcttctttgcttgctttgtcaacagcaactatatcca---------------tatga---ttgtcagttttactcttttctgtctt |
27747415 |
T |
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| Q |
224 |
cttcctcttcttaacacaaggttcctcaatgaggaactcatctgcttcttcattagcttgttgatcactatcatcatctgatgaatacttcaatttattt |
323 |
Q |
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||||||||||||||||| |||||||||||| |||||||| |||| ||||| || ||||||||||||||||||||||||||||||||||| |||| || |
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| T |
27747414 |
cttcctcttcttaacactaggttcctcaat---gaactcatttgctgcttcaataacttgttgatcactatcatcatctgatgaatacttcgatttgttc |
27747318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 78 - 155
Target Start/End: Original strand, 38527375 - 38527452
Alignment:
| Q |
78 |
agattatatcccttgagaccagtttctatccccttgtcatcagcaagcaatagttcaagctcttctttgcttgctttg |
155 |
Q |
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||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38527375 |
agattatatcccttgagaccagtacctgtccccttgtcatcagcaagcaacagttcaagctcttctttgcttgctttg |
38527452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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