View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1134_low_20 (Length: 340)
Name: NF1134_low_20
Description: NF1134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1134_low_20 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 123; Significance: 4e-63; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 87 - 217
Target Start/End: Complemental strand, 26790943 - 26790813
Alignment:
| Q |
87 |
tagtatcataggatggaaattcctatatctctccaatttacaggttccattttcttaatccaatttctaaactctttacttgttgttatgttaccaaaat |
186 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26790943 |
tagtctcaaaggatggaaattcctatatctctccaatttacaggttccattttcttaatccaatttctaaactctttacttgttgttatgttaccaaaat |
26790844 |
T |
|
| Q |
187 |
atgatgttacattggttttattttaatatat |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
26790843 |
atgatgttacattggttttattttaatatat |
26790813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 26784608 - 26784554
Alignment:
| Q |
96 |
aggatggaaattcctatatctctccaatttacaggttccattttcttaatccaat |
150 |
Q |
| |
|
||||||||||||| |||| ||||||||| |||||||||||||| |||||| |||| |
|
|
| T |
26784608 |
aggatggaaattcttatacctctccaatatacaggttccatttacttaattcaat |
26784554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 26831312 - 26831263
Alignment:
| Q |
96 |
aggatggaaattcctatatctctccaatttacaggttccattttcttaat |
145 |
Q |
| |
|
||||||||||||| |||| |||||| |||| ||||||| ||||||||||| |
|
|
| T |
26831312 |
aggatggaaattcttatacctctccgatttgcaggttcgattttcttaat |
26831263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University