View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1134_low_21 (Length: 335)
Name: NF1134_low_21
Description: NF1134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1134_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 14 - 165
Target Start/End: Complemental strand, 3230109 - 3229958
Alignment:
| Q |
14 |
ttctagaagataggaaaggcggtttatgccttctaagaccaaagacacccccctgtcggcaagcctttattgagggctggcaagcctttaatataatatc |
113 |
Q |
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| T |
3230109 |
ttctagaagatgggaaaggcggtttatgccttctaagaccaaagacgcccccctgtcggcaagcctttattgagggctcgcaagcctttaatataatatc |
3230010 |
T |
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| Q |
114 |
ggcggtccaaattgcnnnnnnnttatttaaaaattcaataaccaaacatatt |
165 |
Q |
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| T |
3230009 |
ggcggtccaaattgaaaaaaaattatttaaaaattcaataaccaaacatatt |
3229958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 222 - 329
Target Start/End: Complemental strand, 3229902 - 3229795
Alignment:
| Q |
222 |
tttcttaacactattacatacctcacccggcaggttcttcataatgacccatttatctattagttcatttgcttcactcttctccctcaaaaaattggca |
321 |
Q |
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| T |
3229902 |
tttcttaacactattacatacctctcccggcaggttcttcataatgacccatttatctattagttcatttgcttcactcttctccctcaaaaaattggca |
3229803 |
T |
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| Q |
322 |
gagaaatg |
329 |
Q |
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| T |
3229802 |
gagaaatg |
3229795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 259 - 329
Target Start/End: Original strand, 3181570 - 3181640
Alignment:
| Q |
259 |
ttcataatgacccatttatctattagttcatttgcttcactcttctccctcaaaaaattggcagagaaatg |
329 |
Q |
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| T |
3181570 |
ttcattatgatccatttatctattagttcatctgcttctctcttttccttcaaaaacttggcagagaaatg |
3181640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 47827400 - 47827346
Alignment:
| Q |
68 |
gtcggcaagcctttattgagggctggcaagcctttaatataatatcggcggtcca |
122 |
Q |
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| T |
47827400 |
gtcggcaagcctttattgagggacgacaagcccttaatataatatcgacggtcca |
47827346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 47832094 - 47832040
Alignment:
| Q |
68 |
gtcggcaagcctttattgagggctggcaagcctttaatataatatcggcggtcca |
122 |
Q |
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| T |
47832094 |
gtcggcaagcctttattgagggacgacaagcccttaatataatattggcggtcca |
47832040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 4330116 - 4330066
Alignment:
| Q |
72 |
gcaagcctttattgagggctggcaagcctttaatataatatcggcggtcca |
122 |
Q |
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| T |
4330116 |
gcaagcctttattgagggatggcaagcccttaatatattattggaggtcca |
4330066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 122
Target Start/End: Original strand, 33123777 - 33123822
Alignment:
| Q |
77 |
cctttattgagggctggcaagcctttaatataatatcggcggtcca |
122 |
Q |
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| T |
33123777 |
cctttattgaaggctagcaagcccttaatataatatcggtggtcca |
33123822 |
T |
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